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Information for unigene UN19780

FASTA Sequence
Unigene ID: UN19780Length: 1027  SNP
ATACATTACACCCTTAAACGCTCTCTCTTATCTCTCGATTAGGTTTCCTTCTACACTTCTTCTTCACCAAACTCGCTCTCTCTCTC
GTTTCGATTTTCACGATGGTTGACGCTAAACAAGTCCGCTTCATCGTCGGAGTTATCGGGAACGTGATCTCTTTCGGTCTATTCTT
CTCGCCAGCTCCAACTTTTTGGAGGATCTACAAGAACAAGTCTGTAGAGGAGTTTCAGCCGTGGCCTTACGTGGCAACCATGATGA
ACTGTATGCTTTGGGTTTTCTACGGACTCCCTGTCGTTCACAAGGATAGTCTACTTGTCACCACCATTAATGCGGTCGGCATGGGT
TTCGAAGCCATCTACATTACCATCTTCTTAATCTACTGTGGCGGCACGAAAAACATCAGGAGGAAGATTGGGCTGTACCTTGTGGC
TGAGGTTATTGCCGTTGCAGGGATTGTTTTGATTACCCTTTTCGCTATTCAAAATGCCTTTGCCAAACAGACCTTCGTTGGTGTCA
TCTGCGATATCTTCAACATTGCTATGTATGGGGCTCCTTCACTTGTCATCAAAAAAGTGATAAGGACAAGGAGTGTAGAGTACATG
CCCTTTCTGTTATCTTTCGTTAGTTTCGTTAACGCTGGGATTTGGACTGCCTACTCTTTGATCTACAAACTCGATCTCTACGTTCT
CATAAGCAATGGTCTTGGAACGACCTTGTGTGCATCTCAGCTAATTGTTTACTTCATGTACCGCAACGCTACTCCGAAGGATGAGA
GTAAAACGAAGCCGGAGATTGAAATTCCTGGGACGGCCTGAGTTTCAAATTCTTGATGTTTGGATCTCCTCTTCTATACATTTTCA
TACACATTTGTGTATGTATTAGGAGTTTATCTTTGCAGCTTTTTGTGTTTGGTTTTGGTTTTAATAACATTACTTCTTTCTTCTGG
ATGGTTTTTTTAATCAAATATTGATTTGTCAAAAATTTATCCCTCTTCCCCGTTTTACTGAATATTAAGCTGTTGTTTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002870717 nodulin MtN3 family protein [Arabidopsis lyrata subsp. lyrata]8722e-091
NP_568579 protein RUPTURED POLLEN GRAIN 1 [Arabidopsis thaliana]8642e-090
NP_001031986 protein RUPTURED POLLEN GRAIN 1 [Arabidopsis thaliana]7621e-078
BAB10907 unnamed protein product [Arabidopsis thaliana]7441e-076
XP_002298546 predicted protein [Populus trichocarpa]6169e-062

Swiss-Prot top hits (Blast detail)Scoree value
Q8LFH5 Protein RUPTURED POLLEN GRAIN 18647e-092
O45102 RAG1-activating protein 1 homolog1272e-006

TrEMBL top hits (Blast detail)Scoree value
B9GI71 Predicted protein6167e-062
B9RUU5 Putative uncharacterized protein6103e-061
C5XQB8 Putative uncharacterized protein Sb03g0272606051e-060
B6T9M1 Putative uncharacterized protein6023e-060
B6TSN3 Putative uncharacterized protein6005e-060

Arabidopsis top hits (Blast detail)Scoree value
AT5G40260.1 nodulin MtN3 family protein8646e-093
AT5G40260.2 nodulin MtN3 family protein7624e-081
AT5G62850.1 AtVEX1 (VEGETATIVE CELL EXPRESSED1)5644e-058
AT3G28007.1 nodulin MtN3 family protein5521e-056
AT4G10850.1 nodulin MtN3 family protein5171e-052

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
63  23%
 
72  15%
 
94  31%
 
113  23%
 
101  8%

Unigene MembersMember information