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Information for unigene UN19787
| FASTA Sequence |
| Unigene ID: UN19787 | Length: 1988 |
SSR | SNP | GGCAAAATCATTATGTTTTTTAAATGATTATGAATGTTTTTTAAATGATTATGAATCGGCAGGAGTTTTTTTGACTATAACCAAAA
CTTGAAAGCCAATAAGTATGAGATTTGGTCTATTACCACAATCGAGATACTATACAGTATTTTATTACAAGATGAAACCCGATACA
TAACAAGATGTACATCAGATAAAGCTCCTACAAAGTTTCACTCCAGCTCCATGACCGGAAATACATTAATTACATAACAAATGTAT
ACTTGGTTTACAAGTCCACCCACGTTTAACTGGAGTTACCGCCCTTATGAAGTTCCCTCTCCTTGTGCACCTTCAGTTGTGCCTTG
TTACCCGGTTTGTGAAAGCCGTCTCCAGTTAACTATTTCATGGTGGTTCTGCAAGTAGCTAGATGTTGTACTTCCTCCTCCAATCC
CATTCTCTTCACTAGCAAATTGTTCAGAGTACCCTGACCACTCGGGGACTATGCCTCCGTCCCTCTCTCTTCTTCTGCTGCTGGAA
GATTCTGCTGTCGAGTCTTCAGTGCTTTCTGCAACAATTCTAATATTGAATTCTGGAATCATAGCAGTGACTTGGTTCGAAACCGG
ATCTGCTCTTGCCTGCTGCTGCTGCTGCTGCTGCTGAGCTTGGTTGGTGTTGACCATGTTTCTCGGAACCTCTGCTCTGCTATCTC
CAACTGAATTTCTTACATTCAGAGACGACTCTTCATCTTCTTCAGGTCTGATCAAAGAAGTAGTAATGCTTGGAACCATTTGATCC
TCATATCTCCTGACTGGATTGAGTCTGGTTGGTTCAGTCTCTTCCATCGTGATGTCTCTAGGGAACTCGATAGGAGCTTCCTCAAA
CTCAGTAGAATCTCCAAGCCCTTCCTCCGATCCGTTCTCTATCGCAGCTCTTGCGGCAGCTTCTAGTTGCCACATCTGCGAAAGCG
CTTCGTGAAGCCGTGCTTTCGCTTCATCTAATCCAACAATTGGTCGAGGATAGTTTGATCCGAGCTCAATACCAGCAGCTTGAAGC
ACGGACTCAGGTGCGTTCCACGGATGATGTATCCACTCTGTGGGGAGTCTCGAAAGTTCTGGGAGCCATCTCCTTACGTATTCACC
GTTTGGATCAAACTTGTATCCTTCGAACTGAGGGTTATCTATGCGGTCAAACTCCCGGCTATCCGGGAGAGTACCGGTAATGTACT
GCCAGCCAAGAGCATCACTCTCTAAATCTGCATCAAGAAGTGTGTCCCAGAAATACTTCATCCCCCATCTCCACGGCAGTTGAAGC
ACTTTCACAAAGAAGCTTGAAACAACTACTCTTATGCGATCATGCAACCAACCAGTAGCCCATAACTCTCTCATCCCAGCATCGAC
CAAGGGGTACCCGGTCCGGCCTTGCCTCCACGCCTTGAAGTAGTTCTCATCAACAGCCCAAGGGAAGAACTTAAGATGGCCGAGGA
GTGGTCTTTCATGAGAGTAGGGATGGTTGAAGCTTATGTACCTAGAGTATTCCCTGAGACCAATAGATTTGACCGCTATCCCTTCC
GCTGTCAGCGTCCTTGGCACGATGATCACGGACCAAGGATAAGGGATCATACAAATGGTTGAAGAAGATCTGAGAAGCACCGGTGG
ATTTAACAACTTCAAGAAGAGAAGCAACACTATCAGTAGATCTCTTGGTGATGAGACAAGTACCAAGGCTTCTAAGCGCAGAATCA
AGCTGAGCCAAACTGTTCTTGAGCCACCACCTTGAAACCCTACCAGGCTGATAGTGTCCTTCTTCCTCTGGTGCCCATACAAACAC
AGCAATTACAGGTCCAGCTCTTACAGCTGCTGCTAAAGCTGGATTGTCTTCAACTCTTAGATCTCTTCTAAACCATACAATACTAC
ACCCACCACCACCACCTGAACATTTATTAGACATCTCTCAAAACTAAGGCTCTTATGGCTGCAGCAAACTGAATTTTTTTAATTCA
ATCTCTGCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| CAG28805 cryptochrome1 [Brassica napus] | 2006 | 2e-222 |
| ABI31780 cryptochrome 1 protein [Brassica rapa] | 2003 | 3e-222 |
| CAB78016 Arabidopsis thaliana flavin-type blue-light photoreceptor (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226, N=1) | 1983 | 7e-220 |
| AAD17364 Arabidopsis thaliana flavin-type blue-light photoreceptor (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226, N=1) | 1983 | 7e-220 |
| XP_002874505 hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp. lyrata] | 1982 | 9e-220 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q43125 Cryptochrome-1 | 1972 | 6e-220 |
| Q96524 Cryptochrome-2 | 841 | 8e-089 |
| P40115 Cryptochrome-1 | 820 | 2e-086 |
| P25078 Deoxyribodipyrimidine photo-lyase | 400 | 1e-037 |
| P00914 Deoxyribodipyrimidine photo-lyase | 398 | 2e-037 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q1JU52 Cryptochrome1 | 2006 | 1e-222 |
| Q0GKU4 Cryptochrome 1 protein | 2003 | 2e-222 |
| D0E0S7 Cryptochrome 1 | 1958 | 4e-217 |
| D0E0T0 Cryptochrome 1 (Fragment) | 1890 | 3e-209 |
| D0E0S9 Cryptochrome 1 (Fragment) | 1827 | 6e-202 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G08920.1 CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/ protein homodimerization/ protein kinase | 1981 | 4e-222 |
| AT1G04400.2 CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization | 841 | 7e-090 |
| AT1G04400.1 CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization | 841 | 7e-090 |
| AT3G15620.1 UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase | 288 | 9e-026 |
| AT5G24850.1 CRY3 (cryptochrome 3); DNA binding / DNA photolyase/ FMN binding | 270 | 1e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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