RadishBase

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Information for unigene UN19822

FASTA Sequence

Unigene ID: UN19822	Length: 966	SSR
GGGTTCACAATGCACTTGGATTATTATTTAAAACTTGAAACATAAAAGGGTCATTACTAGCACAACCGAAAGGTTCAAAGCGAAAA GAAAACAGAAAAATAAAAACAGTTCAGACGATCCATTTTTGCAGAAGCAAACAGAGATCACCTCCCAAGTGCATTAACGAAGCTCA AACAACAACACTTTTGACCGCATAGCTCAGAAGCTTCCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTTTGGATGTT GTAATCAGCCAAAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATGCCTTCTTTGTCCT GAATCTTAGCCTTCACATTGTCAATCGTGTCTGAGCTTTCAACTTCCAAGGTTATAGTCTTGCCTGTCAATGTCTTGACAAAGATC TGCATACCACCACGAAGACGCAACACAAGATGAAGCGTAGACTCCTTCTGGATGTTGTAATCCGCAAGCGTGCGTCCATCCTCGAG CTGTTTCCCGGCGAAGATGAGTCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTATCGATCGTGT CTGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCATACCACCTCTCAACCTGAGAACCAGA TGGAGAGTTGACTCTTTCTGGATGTTGTAATCGGCAAGAGTGCGTCCGTCCTCTAGCTGCTTACCGGCGAAGATGAGCCTCTGCTG GTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCT TGCCGGTGAGTGTTTTCACGAAAATTTGCATCTTGAAAGAGTGAGAGAGAGAGAGAGAGAGAGACGTAAGAGCGATTTAGGGTTTC TGAGAGAGACGAAAGGATCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_851029 polyubiquitin 3 [Arabidopsis thaliana]	1148	2e-123
NP_568397 polyubiquitin 4 [Arabidopsis thaliana]	1148	2e-123
AAO43307 putative polyubiquitin [Arabidopsis thaliana]	1148	2e-123
CBI22349 unnamed protein product [Vitis vinifera]	1148	2e-123
CBI22354 unnamed protein product [Vitis vinifera]	1148	2e-123

Swiss-Prot top hits (Blast detail)	Score	e value
P59263 Ubiquitin	379	1e-035
P69308 Ubiquitin	379	1e-035
P69309 Ubiquitin	379	1e-035
P69310 Ubiquitin	379	1e-035
P69311 Ubiquitin	379	1e-035

TrEMBL top hits (Blast detail)	Score	e value
Q1EC66 AT5G03240 protein	1148	1e-123
Q6KFS0 Putative polyubiquitin (Fragment)	1148	1e-123
A1X1E5 Polyubiquitin	1145	3e-123
C0PSZ6 Putative uncharacterized protein	1144	4e-123
Q93ZJ0 AT4g05320/C17L7_240	1143	5e-123

Arabidopsis top hits (Blast detail)	Score	e value
AT5G03240.1 UBQ3 (POLYUBIQUITIN 3); protein binding	1149	5e-126
AT5G20620.1 UBQ4; protein binding	1149	5e-126
AT5G03240.2 UBQ3 (POLYUBIQUITIN 3); protein binding	1149	5e-126
AT5G03240.3 UBQ3 (POLYUBIQUITIN 3); protein binding	1149	5e-126
AT4G05320.2 UBQ10 (POLYUBIQUITIN 10); protein binding	1138	1e-124

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	1			20%


8	4			80%

Unigene Members	Member information