Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN19831

FASTA Sequence
Unigene ID: UN19831Length: 1517  SNP
GGGGGAGATAATGGTTCTTCGTCTGTCGTCGACAATGAGGCGTCTGGGAATCATCACTAATCCCGCCGCCGTCACGCCGACGCTAA
TCTCTTCAACGGCGTCTTTCGCCAGAAACCTGAACTTACCATCTCCCCTCCGCAATCACCATCTTACCAGTTCCATTTGCTTCCTC
AAATCCCGAAGCCTCCTCTCCTCCTTCTCATCTTTCTCTTCTTCTTCGGCAGCTTATCTTCCCTCACTCGACGAGTTTGCTTCAAC
TAAAGGTTCTGTGAGGGCGAGAGATGATAACAAGAAGGTGGTCTTGAAGGGTATGAGCTATGCTTCGCTCCAAGAATGGGTTGAAT
CGCATGGGTTTCGACCTGGACAAGCTATGATGCTGTGGAAGAGATTATACAAGGATAACATATGGGCTCAAGATGTTGATCAGCTT
GAAGGTCTGAACAAAGATTTCAAGAGAATGATTGGTGAGCATGCTGAGTTTGGGGCATTATCGTTTAAGGATGTTAGGTCGGCTTC
AGATGGAACTAGGAAGATTCTGTTCACGTTGGATGATGGGCTTGTGATCGAGACAGTTGTTATACCTTGTGATCGTGGCAGGACAA
CAGTTTGTGTTTCGAGCCAAGTGGGTTGTGCCATGAATTGTCAGTTCTGCTACACTGGCAGGATGGGTTTAAAGAGAAATCTCACT
GCTGCTGAGATTGTTGAGCAAGCTGTTTACGCAAGGCGGTTGCTTTCTCATGAAGTGGGATCAATAACAAATGTCGTGTTTATGGG
AATGGGAGAGCCATTTCACAATATTGAGAATGTCATCAAAGCTGCAAATATAATGGTAGATGAGAATGGACTTCACTTTAGTCCAC
GCAAGGTCACAGTCTCTACCAGTGGCCTTGTTCCTCAGCTAAAGCGGTTTCTCCGTGAATGTAACTGCGCTTTGGCAGTCAGTCTT
AATGCAACAACCGATGAGGTTAGAAACTGGATCATGCCCATCAACAGAAAATACAAGTTATCTTTGCTCCTTGAGACGCTCAGAGA
AGAACTCAGTTCAATGCACAAGTACAAAGTGTTGTTCGAGTACGTGATGCTCGCAGGAGTGAATGACAGAATGGAAGATGCAAGGC
GGCTAGTGGAGCTTGTGCAGGGAATCCCATGCAAGATCAACCTTATTCAGTTCAACCCACACAGTGGTTCTCAGTTCATACCGACC
GATGAAGACAAAATGATCAAGTTCCGTAATGTTCTGGCTGAAGGAGGCTGCACTGTTTTAATGCGGTTTAGCCGAGGTAATGATCA
AATGGCAGCATGTGGGCAGCTTGGCATGCTTGGTGCTACTCAAGCACCAGTGATGAGGGTGCCTGAGCAGTTCCGCACCGCTCTAA
AAGCATCTGTTTGATCTGATTAGGACAAAAGATGTACTAAATCTTCATGTTGTGAAATTACATTGATTATATTTAAATTTTAAGGT
TTTTTTCTTCAGAAGTTCTTTAAAATTTTTAAATGTCAATTTCAGTTTTTTTTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002886632 radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata]20615e-229
NP_564755 radical SAM domain-containing protein [Arabidopsis thaliana]20463e-227
AAC24056 Contains similarity to hypothetical 43.1 KD protein in NDK-GCPE intergenic region gb|493519 from E. coli sequence gb|U02965 [Arabidopsis thaliana]20346e-226
XP_002262749 PREDICTED: hypothetical protein [Vitis vinifera]15373e-168
ACF84494 unknown [Zea mays]14352e-156

Swiss-Prot top hits (Blast detail)Scoree value
Q7NS85 Ribosomal RNA large subunit methyltransferase N6651e-068
A9LZN6 Ribosomal RNA large subunit methyltransferase N6516e-067
Q9JZ42 Ribosomal RNA large subunit methyltransferase N6491e-066
Q2Y6F3 Ribosomal RNA large subunit methyltransferase N6481e-066
A1KUD6 Ribosomal RNA large subunit methyltransferase N6462e-066

TrEMBL top hits (Blast detail)Scoree value
Q93XX3 Putative uncharacterized protein At1g6023020462e-227
O80746 T13D8.12 protein20344e-226
B4FQV1 Putative uncharacterized protein14351e-156
B9SHC0 Catalytic, putative14323e-156
C5XEK5 Putative uncharacterized protein Sb03g02923014162e-154

Arabidopsis top hits (Blast detail)Scoree value
AT1G60230.1 radical SAM domain-containing protein20477e-230
AT2G39670.1 radical SAM domain-containing protein4742e-047
AT3G19630.1 radical SAM domain-containing protein4732e-047
AT2G39670.2 radical SAM domain-containing protein4652e-046

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  10%
 
65  50%
 
213  30%
 
81  10%

Unigene MembersMember information