RadishBase

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Information for unigene UN19831

FASTA Sequence

Unigene ID: UN19831	Length: 1517		SNP
GGGGGAGATAATGGTTCTTCGTCTGTCGTCGACAATGAGGCGTCTGGGAATCATCACTAATCCCGCCGCCGTCACGCCGACGCTAA TCTCTTCAACGGCGTCTTTCGCCAGAAACCTGAACTTACCATCTCCCCTCCGCAATCACCATCTTACCAGTTCCATTTGCTTCCTC AAATCCCGAAGCCTCCTCTCCTCCTTCTCATCTTTCTCTTCTTCTTCGGCAGCTTATCTTCCCTCACTCGACGAGTTTGCTTCAAC TAAAGGTTCTGTGAGGGCGAGAGATGATAACAAGAAGGTGGTCTTGAAGGGTATGAGCTATGCTTCGCTCCAAGAATGGGTTGAAT CGCATGGGTTTCGACCTGGACAAGCTATGATGCTGTGGAAGAGATTATACAAGGATAACATATGGGCTCAAGATGTTGATCAGCTT GAAGGTCTGAACAAAGATTTCAAGAGAATGATTGGTGAGCATGCTGAGTTTGGGGCATTATCGTTTAAGGATGTTAGGTCGGCTTC AGATGGAACTAGGAAGATTCTGTTCACGTTGGATGATGGGCTTGTGATCGAGACAGTTGTTATACCTTGTGATCGTGGCAGGACAA CAGTTTGTGTTTCGAGCCAAGTGGGTTGTGCCATGAATTGTCAGTTCTGCTACACTGGCAGGATGGGTTTAAAGAGAAATCTCACT GCTGCTGAGATTGTTGAGCAAGCTGTTTACGCAAGGCGGTTGCTTTCTCATGAAGTGGGATCAATAACAAATGTCGTGTTTATGGG AATGGGAGAGCCATTTCACAATATTGAGAATGTCATCAAAGCTGCAAATATAATGGTAGATGAGAATGGACTTCACTTTAGTCCAC GCAAGGTCACAGTCTCTACCAGTGGCCTTGTTCCTCAGCTAAAGCGGTTTCTCCGTGAATGTAACTGCGCTTTGGCAGTCAGTCTT AATGCAACAACCGATGAGGTTAGAAACTGGATCATGCCCATCAACAGAAAATACAAGTTATCTTTGCTCCTTGAGACGCTCAGAGA AGAACTCAGTTCAATGCACAAGTACAAAGTGTTGTTCGAGTACGTGATGCTCGCAGGAGTGAATGACAGAATGGAAGATGCAAGGC GGCTAGTGGAGCTTGTGCAGGGAATCCCATGCAAGATCAACCTTATTCAGTTCAACCCACACAGTGGTTCTCAGTTCATACCGACC GATGAAGACAAAATGATCAAGTTCCGTAATGTTCTGGCTGAAGGAGGCTGCACTGTTTTAATGCGGTTTAGCCGAGGTAATGATCA AATGGCAGCATGTGGGCAGCTTGGCATGCTTGGTGCTACTCAAGCACCAGTGATGAGGGTGCCTGAGCAGTTCCGCACCGCTCTAA AAGCATCTGTTTGATCTGATTAGGACAAAAGATGTACTAAATCTTCATGTTGTGAAATTACATTGATTATATTTAAATTTTAAGGT TTTTTTCTTCAGAAGTTCTTTAAAATTTTTAAATGTCAATTTCAGTTTTTTTTTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002886632 radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata]	2061	5e-229
NP_564755 radical SAM domain-containing protein [Arabidopsis thaliana]	2046	3e-227
AAC24056 Contains similarity to hypothetical 43.1 KD protein in NDK-GCPE intergenic region gb\|493519 from E. coli sequence gb\|U02965 [Arabidopsis thaliana]	2034	6e-226
XP_002262749 PREDICTED: hypothetical protein [Vitis vinifera]	1537	3e-168
ACF84494 unknown [Zea mays]	1435	2e-156

Swiss-Prot top hits (Blast detail)	Score	e value
Q7NS85 Ribosomal RNA large subunit methyltransferase N	665	1e-068
A9LZN6 Ribosomal RNA large subunit methyltransferase N	651	6e-067
Q9JZ42 Ribosomal RNA large subunit methyltransferase N	649	1e-066
Q2Y6F3 Ribosomal RNA large subunit methyltransferase N	648	1e-066
A1KUD6 Ribosomal RNA large subunit methyltransferase N	646	2e-066

TrEMBL top hits (Blast detail)	Score	e value
Q93XX3 Putative uncharacterized protein At1g60230	2046	2e-227
O80746 T13D8.12 protein	2034	4e-226
B4FQV1 Putative uncharacterized protein	1435	1e-156
B9SHC0 Catalytic, putative	1432	3e-156
C5XEK5 Putative uncharacterized protein Sb03g029230	1416	2e-154

Arabidopsis top hits (Blast detail)	Score	e value
AT1G60230.1 radical SAM domain-containing protein	2047	7e-230
AT2G39670.1 radical SAM domain-containing protein	474	2e-047
AT3G19630.1 radical SAM domain-containing protein	473	2e-047
AT2G39670.2 radical SAM domain-containing protein	465	2e-046

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	1			10%


6	5			50%


21	3			30%


8	1			10%

Unigene Members	Member information