 |
Information for unigene UN19833
| FASTA Sequence |
| Unigene ID: UN19833 | Length: 1419 |
| SNP | GGAAGAAACAAAACAAACAAATTAATAAAAAATAAATAGTAATATTAGTAGTAAATATTTTTTTATTAAACGATGGGTGCATATTC
TGGAGCTTTTACAATTTTTATTTTCTGTTTGTTGGGATTTTCAGCCAATGCTGTATACATCACCATTGGTTCCTCTTCAGGTTCTG
ATATTACTCAGGCACTTCTGAAAGCATTCACAACAGCATGCCAATCTCCCACACCGAGCAAAGTGGTGATCCCAAAAGGAGTGTTC
AAGCTTGGTGAGATCCAGATGAGGGGTCCATGCAAAGCCCCAATCGAGATCACCATTCAAGGCACTGTCAAAGCTGATGGTAACGC
GATCCAGGGGAAGGACACATGGGTTGTCTTCGGCAACATTAATGGATTTAAGTTGAACGGAGGTGGAGCTTTCGATGGTGAAGGAA
ACGCAGCTTGGAGGGTTAACAACTGTCACCAGACTTTCAACTGCAAGAAACTTCCTATCAGTATAAGATTTGATTTCGTGGAGAAC
GCTGAGATCAGAGACATATCTTCAATAGATGCCAAGAACTTCCACATCAACGTGCTTGGTGCCAAGAACATGACCTTTGATCACAT
CAACATCATTGCTCCAAAAGACAGTCCCAACACTGATGGTATCCATTTGGGAAGAAGTGACGGAGTCAAGATCCTTAACACATTCA
TCACCACCGGAGATGACTGCATCTCTGTTGGAGATGGGATGAGGAACCTCCACGTGGAGAAAGTCACGTGCGGTCCAGGACATGGA
ATCAGTGTCGGAAGCCTTGGAAGGTACGGAATGGAACAAGATGTCACCGGCATTAGAGTCATAAACTGCACTCTCCAAGAGACTAC
CAACGGACTGAGGATCAAGACATGGCCGTCTGCAGCTTGCTCCACCACTGCCTCCGATATTCATTTCGAGAATATCATTGTCAAGA
ACGTTTTAAACCCAATCCTCATCGACCAAGAGTACTGCCCTTGGAACCAATGCAACAAGCAGAAACCATCAACGATTAAGCTTGTG
AACATCAGCTTCAAGCAAATCAGAGGAACATCAGGGAACAAGGATGCAGTGAAGCTTTTGTGCAGCAGGGGATACCCATGCCAAAA
CGTCGAGATTGGAGACATCGATATCAAGTACAACGGAGCAGATGGTCCAGCGACTTTCCAGTGCTCAAACGTGAGCCCCAGACTCA
TGGGAACTCAGAACCCTAAAGCTTGCACTGGTCCAGTGACCAATTTACCCCAATAAGTAGAAGGCTCCAAAAAATATTAACCTAAA
AACACCCATTCATTATTTGTTTTGTTTCCTCTACACACAATTTAATTATATGGTCTATGATGTATGCTCTCATTCTTTTTGATTCC
AAAATAAATGCATTCATTATTCCTAGGGCTGTTCAATATGGGT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABL63521 pollen-specific protein MF9l [Brassica oleracea var. alboglabra] | 2031 | 1e-225 |
| ABG38468 pollen-expressed protein MF9c [Brassica oleracea] | 2022 | 1e-224 |
| ABN13878 polygalacturonase [Brassica rapa subsp. campestris] | 2019 | 3e-224 |
| XP_002884668 polygalacturonase 3 [Arabidopsis lyrata subsp. lyrata] | 1843 | 8e-204 |
| NP_187439 polygalacturonase-like protein [Arabidopsis thaliana] | 1832 | 2e-202 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P35337 Polygalacturonase | 1620 | 2e-179 |
| Q39766 Polygalacturonase | 1057 | 5e-114 |
| Q39786 Polygalacturonase | 1056 | 6e-114 |
| Q05967 Polygalacturonase | 1006 | 4e-108 |
| P24548 Exopolygalacturonase (Fragment) | 989 | 4e-106 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A1ECA6 Pollen-specific protein MF9l | 2031 | 9e-226 |
| Q0Z964 Pollen-expressed protein MF9c | 2022 | 1e-224 |
| B3EZF0 Polygalacturonase | 2019 | 2e-224 |
| Q9SFD2 Polygalacturonase (PGA3) | 1832 | 1e-202 |
| O65905 Polygalacturonase | 1831 | 1e-202 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G07820.1 polygalacturonase 3 (PGA3) / pectinase | 1832 | 6e-205 |
| AT3G07840.1 polygalacturonase, putative / pectinase, putative | 1685 | 6e-188 |
| AT3G07830.1 polygalacturonase, putative / pectinase, putative | 1676 | 7e-187 |
| AT5G48140.1 polygalacturonase, putative / pectinase, putative | 1663 | 2e-185 |
| AT3G07850.1 exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase | 888 | 2e-095 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
