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Information for unigene UN19843

FASTA Sequence
Unigene ID: UN19843Length: 1001 SSR 
GGAAACCCATTTCTTCTTCCTTCTGTGCCGCGCAACCTCTCCCCCTCTCTCTCTCTCTCTATCAGCTCTCCTCTTCCTCTCAAAGA
GACATGTCTGATTCAAAGATGGTGGTTCCAGAGTCTGTGCTAAAGAAGATCAAGAGGGAAGAGGAATGGGCATTGGCCAAGAAACA
AGAAGCTGAAGCTGCTAAGAAGAAGAGCGTTGTGACCCGCAAGCTTATCTTCAAGAGAGCTGAGCAGTACGCCAAAGAATACGCCG
AGAAGGATAATGAGTTGATCCGTTTGAAGCGAGAGGCTAAGTTGAAAGGAGGGTTCTACGTTGATCCTGAGGCAAAGCTTCTCTTT
ATCATTCGTATCCGTGGTATCAATGCCATTGACCCGAAAACCAAGAAAATTCTGCAGCTCCTGCGTTTGAGACAAATCTTCAATGG
TGTGTTCCTTAAGGTGAACAAGGCAACAATCAACATGTTGCGTCGTGTTGAGCCTTACGTGACTTACGGATACCCAAACTTGAAGA
GTGTCAAGGAGCTGATCTACAAGAGGGGTTATGGAAAGCTGAACCACCAGAGGATAGCACTTACTGACAACTCGATAGTCGCTGAA
GGTCTAGGCAAGCACGAGATCATCTGTGTGGAGGATCTGATCCACGAGATCATGACCGTTGGACCTCACTTCAAAGAAGCCAACAA
CTTCCTTTGGCCATTCCAGTTGAAGGCACCGCTCGGTGGACTAAAGAAGAAGAGGAACCACTACGTTGAAGGTGGTGATGCTGGAA
ACAGGGAAAATTTCATCAACGAGCTTGTCAGGAGGATGAATTGATGGAAACTTCCTTCTTTATCTTTCCCCATTTCATAGATTTTT
GGTTGGATCTGAAGTTTTTTTTCCTTGTATCAGAGACCATGTGATCTTTGTTGGAGATTAGGCTTTGATTAGTTTGCTCTGTTTGC
CAAGTTTGTGGTTTTTACATAATGTTCTTCTCAACAAAGTGTTAGATTGTTCTTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002862275 60S ribosomal protein L7 [Arabidopsis lyrata subsp. lyrata]11813e-127
NP_850411 60S ribosomal protein L7-3 [Arabidopsis thaliana]11804e-127
XP_002880084 60S ribosomal protein L7 [Arabidopsis lyrata subsp. lyrata]11804e-127
NP_850410 60S ribosomal protein L7-3 [Arabidopsis thaliana]11786e-127
AAO00739 Unknown protein [Arabidopsis thaliana]11714e-126

Swiss-Prot top hits (Blast detail)Scoree value
P60039 60S ribosomal protein L7-311783e-128
P60040 60S ribosomal protein L7-211301e-122
Q9LHP1 60S ribosomal protein L7-411272e-122
Q58DT1 60S ribosomal protein L77591e-079
P18124 60S ribosomal protein L77562e-079

TrEMBL top hits (Blast detail)Scoree value
Q3EBG6 Putative uncharacterized protein At2g44120.211803e-127
C9E0S6 Putative uncharacterized protein10728e-115
Q38HU4 Thaliana 60S ribosomal protein L7 (At2g44120)10639e-114
B9HK59 Predicted protein10612e-113
B3TLT9 60S ribosomal protein L710558e-113

Arabidopsis top hits (Blast detail)Scoree value
AT2G44120.2 60S ribosomal protein L7 (RPL7C)11811e-129
AT2G44120.1 60S ribosomal protein L7 (RPL7C)11792e-129
AT2G01250.1 60S ribosomal protein L7 (RPL7B)11317e-124
AT3G13580.3 60S ribosomal protein L7 (RPL7D)11282e-123
AT3G13580.2 60S ribosomal protein L7 (RPL7D)11282e-123

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
117  58%
 
64  33%
 
91  8%

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