Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN19844

FASTA Sequence
Unigene ID: UN19844Length: 945 SSR 
GGCTCTCTCTCTCTCTTCGTTCTTCCAACTCCTACCGGCGCAGCTGAGAAGTTTATCTCGCGGAAGAGGCAACCATGGGTATATCT
CGTGACTCAATCCACAAGAGGCGTGCCACTGGAGGCAAGCAGAAGGGATGGAGGAAGAAGCGAAAGTACGAGATGGGAAGGCAGCC
AGCCAACACCAAGCTGTCAAGCAACAAGACTGTTAGAAGAATCCGTGTTCGTGGAGGCAACGTCAAGTGGCGTGCGTTGAGGCTCG
ACACTGGTAACTACTCTTGGGGAAGTGAGGCAGTTACCCGCAAGACCAGAGTCCTTGATGTTGTTTACAACGCCTCCAACAACGAG
CTTGTCCGTACAAAGACGCTAGTCAAGAGCGCCATTGTTCAGGTGGATGCCGCGCCATTCAAGCAGTGGTATCTCCAGCACTATGG
TGTCGAGGTTGGTCGCAAGAAGAAGAATGCTGCTTCCGCTGCCAAGAAGGAAACTGAGGATGGTGAAGAAGCAGCTCCAGCTGCTG
CTGCTGCTGCTGCTCCTGAGGAGGTGAAGAAGAGCAACCACGTGCTGAGAAAGATTGAGAGCCGTCAAGAGGGACGAAGTCTTGAT
TCCCACATTGAGGAGCAGTTTGCGAGCGGTCGTTTGTTGGCTTGCATCTCATCAAGGCCCGGCCAGTGCGGACGTGCTGATGGATA
CATTCTGGAAGGTAAAGAGCTGGAATTCTACCAGAAGAAGATCCAGAAGAAGAAGGGAAAGGGTGCTGCTTAAAAGCTTGTTCTTT
GCCTGAAACCTTTTTGTTTTCTTTATACATGCTGTTTTGAGGTTTCAGTTTGTAATACTGTGTGAGAACTTATGTTTTTGGATTAG
CTTAATTCGTATTTCTTAGTACTTCCATCAGTTATTATTGTACAATGGTTTGAGATATCTATTTTCATGGTTTCCCTTTATTACT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197529 40S ribosomal protein S8-1 [Arabidopsis thaliana]10163e-108
BAJ89904 predicted protein [Hordeum vulgare subsp. vulgare]9771e-103
ACF06617 40S ribosomal protein S8 [Elaeis guineensis]9761e-103
ABL85034 ribosomal subunit 8E protein [Brachypodium sylvaticum]9724e-103
XP_002873989 ribosomal protein S8 [Arabidopsis lyrata subsp. lyrata]6947e-071

Swiss-Prot top hits (Blast detail)Scoree value
Q93VG5 40S ribosomal protein S8-110465e-113
P49199 40S ribosomal protein S89802e-105
Q08069 40S ribosomal protein S89759e-105
O81361 40S ribosomal protein S86576e-068
Q9FIF3 40S ribosomal protein S8-26236e-064

TrEMBL top hits (Blast detail)Scoree value
B3TM36 Ribosomal protein S89761e-103
A1YKE4 Ribosomal protein S89723e-103
C6T3Z7 Ribosomal protein S8 (Fragment)6911e-070
C5XZ84 Ribosomal protein S86775e-069
A9P8H4 Ribosomal protein S86712e-068

Arabidopsis top hits (Blast detail)Scoree value
AT5G20290.1 40S ribosomal protein S8 (RPS8A)10473e-114
AT5G59240.1 40S ribosomal protein S8 (RPS8B)6235e-065

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  7%
 
67  50%
 
85  36%
 
71  7%

Unigene MembersMember information