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Information for unigene UN19852
| FASTA Sequence |
| Unigene ID: UN19852 | Length: 1315 |
| SNP | GTATGATTGCTGAAGCAATGAGCAGAGTTGGCAGGAAGGGTGTGGTGACACTTGAGGCGGGTAAAAGTGCCGAGAACGCTCTCTAC
GTTGTGGAAGGAATGCAATTTGATCGCGGTTACGTCTCCCCTTACTTTGTGACAGACAGTGAGAAAATGTCGGTTGAGTTCGACAA
TTGCAAGTTGCTTCTTGTTGACAAGAAGATTACCAATGCAAGGGATCTTGTTGGTGTTTTGGAGGATGCAATTAGAGGAGGATACC
CGATTTTAATAATTGCAGAAGACATTGAGCAGGAGGCTTTAGCGACCCTTGTTGTTAACAAGCTTAGAGGCACACTGAAGATTGCA
GCTCTCAAGGCTCCAGGATTTGGAGAGCGCAAGAGCCAATACCTTGACGATATTGCCATCCTCACTGGAGCAACTGTGATTCGTGA
GGAATTTGGTCTTTCACTTGACAAAGCTGGAAAAGAGGTTCTTGGACATGCCGCAAAGGTGGTCCTCACCAAGGAGACTTCGACCA
TTGTGGGTGATGGGAGCACACAGGACGCAGTGCAAAAGCGTGTTACACAGATTAAGAACCTTATTGAGCAAGCAGAGCAAGATTAT
GAGAAGGAGAAACTGAATGAGAGAATTGCAAAGCTCTCTGGTGGAGTTGCTGTGATTCAGGTCGGAGCACAAACGGAGACAGAACT
CAAAGAGAAGAAACTGAGAGTTGAAGATGCTCTTAATGCTACAAAGGCTGCTGTTGAGGAAGGTATTGTCGTTGGTGGTGGCTGTA
CTCTGCTTCGTCTTGCTTCCAAGGTTGATGCCATTAAAGCCGGTCTTGACAATGATGAAGAAAAGGTTGGAGCGGATATCGTGAAA
AGAGCACTGAGTTACCCTCTGAAACTGATTGCCAAGAACGCCGGAGTCAATGGAAGCGTAGTTAGCGAGAAGGTGCTTTCTAACGA
TAATGTGAAGTACGGTTACAATGCTGCAACCGGCAAGTACGAGGATCTAATGGCTGCAGAATCATCGATCCAACTAAGGTTGTGAG
ATGTTGCTTGGAACACGCAGCTTCGTTGCAAAGACATTCTTGATGTCTGACTGTGTCGTTGTTGAGATCAAGGAGCCTGAGCCAGT
TCCTGTAGGCAACCCAATGGACAACTCAGGTTATGGATACTGAGGTGATAGGGGAATAAAGTAACACTGCCAGAAACTTTGATTCC
TTTTAGCTTTGTAATGGATGAGCAAGTGTAATGATTTTGAACAAGAGAATGTGCTTTGTACTGAAAATTTTGAACCGGTCATATGA
ATAAATCATGATTCCTTAGTAAAAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| P21241 RecName: Full=RuBisCO large subunit-binding protein subunit beta, chloroplastic; AltName: Full=60 kDa chaperonin subunit beta; AltName: Full=CPN-60 beta; Flags: Precursor | 1613 | 3e-177 |
| NP_175945 RuBisCO large subunit-binding protein subunit beta [Arabidopsis thaliana] | 1584 | 8e-174 |
| XP_002894506 CPN60B [Arabidopsis lyrata subsp. lyrata] | 1584 | 8e-174 |
| NP_187956 TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] | 1541 | 8e-169 |
| XP_002285746 PREDICTED: hypothetical protein [Vitis vinifera] | 1515 | 8e-166 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P21241 RuBisCO large subunit-binding protein subunit beta, chloroplastic | 1613 | 1e-178 |
| P21240 RuBisCO large subunit-binding protein subunit beta, chloroplastic | 1584 | 3e-175 |
| P08927 RuBisCO large subunit-binding protein subunit beta, chloroplastic | 1487 | 6e-164 |
| Q43831 RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) | 1431 | 2e-157 |
| Q42693 RuBisCO large subunit-binding protein subunit beta-1 (Fragment) | 1172 | 2e-127 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9DFS9 AT1G55490 protein | 1584 | 5e-174 |
| Q9LJE4 GloEL protein; chaperonin, 60 kDa | 1541 | 5e-169 |
| B9SBN5 Rubisco subunit binding-protein beta subunit, rubb, putative | 1510 | 2e-165 |
| B9GXY0 Predicted protein | 1502 | 2e-164 |
| A9PF58 Predicted protein | 1495 | 1e-163 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G55490.1 CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding | 1584 | 3e-176 |
| AT1G55490.2 CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding | 1584 | 3e-176 |
| AT3G13470.1 chaperonin, putative | 1541 | 3e-171 |
| AT5G56500.1 ATP binding / protein binding | 1463 | 3e-162 |
| AT5G56500.2 ATP binding / protein binding | 1463 | 3e-162 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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