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Information for unigene UN19853
| FASTA Sequence |
| Unigene ID: UN19853 | Length: 1245 |
| SNP | GGACCAATGAACACTTCCACACTGCTCTAGGGAACAGCAACCCATCTGCACTTCGTGAAACTGTTGTTGAGGTTCCCAATGTTTCT
TGGGATGACATTGGAGTTCTTGAGAATGTCAAGAGAGAGCTCCAGGAGACTGTTCAATACCCTGTCGAGCACCCAGAGAAGTTTGA
GAAATTCGGTATGTCTCCGTCTAAGGGAGTTCTTTTCTACGGTCCTCCTGGATGTGGTAAAACTCTTTTGGCCAAAGCTATAGCCA
ACGAATGCCAAGCAAACTTCATCAGTGTCAAAGGTCCTGAGCTTCTCACTATGTGGTTTGGTGAGAGTGAAGCGAATGTCCGTGAA
ATCTTTGACAAGGCCCGTCAGTCTGCTCCATGTGTTCTCTTCTTTGACGAGCTCGACTCCATTGCGACTCAGAGAGGAGGTGGAAG
CGGAGGTGATGGTGGCGGTGCAGCTGATAGAGTCCTGAACCAGCTTTTGACTGAGATGGATGGAATGAACGCCAAGAAAACCGTCT
TCATCATCGGAGCAACCAACAGACCCGACATCATTGACTCTGCTCTTCTCCGACCAGGAAGGCTCGACCAGCTCATTTACATTCCG
CTGCCGGACGAGGATTCACGTCTCAATATCTTCAAGGCCGCCTTGAGGAAGTCTCCTATTGCTAAAGATGTAGACATCAACGCTCT
CGCTAAGTACACACAGGGATTCAGTGGTGCTGATATAACTGAGATTTGCCAGAGGGCTTGCAAATACGCCATCAGAGAAAACATCG
AGAAGGACATTGAGAAGGAGAAGAGGAGGAGCGAGAACCCTGAAGCCATGGAGGAAGATGGAGTTGATGAAGTGTCAGAGATAAAA
GCTGCACACTTTGAGGAGTCGATGAAGTACGCACGCAGGAGTGTGAGCGATGCAGACATCAGGAAGTACCAAGCTTTTGCTCAGAC
GCTTCAGCAGTCTAGAGGGTTTGGTTCCGAGTTCAGGTTCGAGACTAATGCTGGTTCAGGTGTAACCACTGGAGTCGCTGATCCTT
TTGCCACGTCTGCAGCTGCTACTGCGGACGATGATGATCTCTACAATTAGTGATCCAGTTTATCATACTTTGTTATTTAAGTTTTC
AGTTGGATTCTCTCTTGCTTCTGGATACCTTGTGTTTCTTTAAGTTATCAGAATTATGTTGGTGCTTTTAATCAATGTTCTCAATT
GACGACTCTTGTTCATTCGTAATGACTATGATTTACAAATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_187595 cell division control protein 48-A [Arabidopsis thaliana] | 1810 | 4e-200 |
| XP_002882640 hypothetical protein ARALYDRAFT_478309 [Arabidopsis lyrata subsp. lyrata] | 1801 | 5e-199 |
| ABF59516 putative spindle disassembly related protein CDC48 [Nicotiana tabacum] | 1644 | 8e-181 |
| AAP53974 Cell division cycle protein 48, putative, expressed [Oryza sativa Japonica Group] | 1630 | 3e-179 |
| XP_002467173 hypothetical protein SORBIDRAFT_01g020910 [Sorghum bicolor] | 1624 | 2e-178 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P54609 Cell division control protein 48 homolog A | 1810 | 2e-201 |
| Q9LZF6 Cell division control protein 48 homolog E | 1692 | 9e-188 |
| Q9SCN8 Cell division control protein 48 homolog D | 1595 | 2e-176 |
| Q96372 Cell division cycle protein 48 homolog | 1588 | 1e-175 |
| P54774 Cell division cycle protein 48 homolog | 1575 | 3e-174 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9DI55 AT3G09840 protein | 1810 | 3e-200 |
| Q1G0Z1 Putative spindle disassembly related protein CDC48 | 1644 | 5e-181 |
| C5WXV4 Putative uncharacterized protein Sb01g046840 | 1639 | 2e-180 |
| Q7XE16 Cell division cycle protein 48, putative, expressed | 1630 | 2e-179 |
| C5X0G5 Putative uncharacterized protein Sb01g020910 | 1624 | 1e-178 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G09840.1 CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding | 1811 | 1e-202 |
| AT5G03340.1 cell division cycle protein 48, putative / CDC48, putative | 1693 | 6e-189 |
| AT3G53230.1 cell division cycle protein 48, putative / CDC48, putative | 1596 | 1e-177 |
| AT3G56690.1 CIP111 (CAM INTERACTING PROTEIN 111); ATPase/ calmodulin binding | 670 | 3e-070 |
| AT1G03000.1 PEX6 (PEROXIN 6); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding | 621 | 1e-064 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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