Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN19854

FASTA Sequence
Unigene ID: UN19854Length: 996  SNP
GGAAAATCTCTCTCTTCAACAAAACATCAAAAAACTAAATAGAGAGAAGAAAAATGGCGAGAGGGAAGATCCAGATCAAGAGGATA
GAGAACCAGACCAACCGACAAGTGACGTATTCAAAGAGAAGAAATGGGTTGTTCAAGAAAGCCCACGAGCTCACGGTTCTGTGTGA
CGCTAGGGTTTCGATTATCATGTTCTCTAGCTCCAACAAGCTTCATGAGTTCATCAGCCCTAACACCTCAACGAAGGAGATCATAG
ATCTGTACCAAACAGTTTCTGATGTTGATGTTTGGAGCGCTCACTATGAGAGAATGCAAGAAACCAAGAGGAAACTGTTGGAGACA
AACAGAAATCTTCGGACTCAGATTAAACAGAGGCTAGGTGAGTGTTTGGACGAGCTTGATATTCAGGAGCTGCGTAGTCTTGAGGA
AGAAATGGAAAACACTTTCAAACTCGTTCGCGAGCGCAAGTTTAAATCACTTGGGAATCAAATCGAGACCACCAAGAAAAAGAACA
AGAGTCAACAAGACATACAAAAGAATCTCATACATGAGCTGGAACTAAGAGCAGAAGATCCTCATTATGGACTAGTAGACAATGGA
GGAGACTACGATTCGGTCCTTGGATATCAACTTCGTTTCCATCAGAACCATCACCACAATTACCCCAACCATGCCCTTCATTCAGC
ATCTGCCTCTGATATCATTACCTTCCACCTTCTTGAGTAATTACGGGTTTGAAGGTTGCTGGTGATGTCATTATCTATCTATTTAA
TAAAATAAATACTTAAAAGCGTAAGGCTGGTTCTACTGAAACCTTAAACTGTCATGTTCCTTAATTATGTATTTTCTTAAACCTTA
AGAACTATGGGTTGTGTGATCAGTAGCTTGCTGCTTTAACTTCTTGTGGATTGAATGTTTTCAACTCTATGTATGATATTAGGTGA
CGACTTCCTACTTATACTTAGTTACTCCGTTTTAATCCATATATCTTTAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAF28894 APETALA3 [Brassica napus]11491e-123
AAP93899 APETALA3 [Brassica napus]11429e-123
AAP93898 APETALA3-2 [Brassica napus]11365e-122
AAB08879 homeotic protein boi2AP3 [Brassica oleracea var. italica]11356e-122
AAY63866 APETALA3 [Brassica juncea]11105e-119

Swiss-Prot top hits (Blast detail)Scoree value
P35632 Floral homeotic protein APETALA 310904e-118
Q07472 Floral homeotic protein PMADS 17178e-075
P23706 Floral homeotic protein DEFICIENS6953e-072
Q944S9 MADS-box transcription factor 164991e-049
Q42498 MADS-box protein CMB24596e-045

TrEMBL top hits (Blast detail)Scoree value
Q6IV03 Floral homeotic protein APETALA311491e-123
Q9M7M0 APETALA311491e-123
Q7XBE7 APETALA311426e-123
Q7XBE8 APETALA3-211363e-122
Q96358 Homeotic protein boi2AP311354e-122

Arabidopsis top hits (Blast detail)Scoree value
AT3G54340.1 AP3 (APETALA 3); DNA binding / transcription factor10913e-119
AT5G51870.1 AGL71 (AGAMOUS-LIKE 71); transcription factor3045e-028
AT5G20240.1 PI (PISTILLATA); DNA binding / transcription factor3037e-028
AT2G45660.1 AGL20 (AGAMOUS-LIKE 20); transcription factor3029e-028
AT4G18960.1 AG (AGAMOUS); DNA binding / transcription factor2983e-027

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
812  35%
 
124  12%
 
68  24%
 
99  26%
 
71  3%

Unigene MembersMember information