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Information for unigene UN19865

FASTA Sequence
Unigene ID: UN19865Length: 1155  SNP
GGAACCACTTACTTTTCTCATGCAAACCCTAATTTCGGCATCCTCTCTCATTTCTCTCTCTTTCATCCTCCCTAGCTCTAAGCCAA
TCTCCACCGCACACTCTGTAACTCCCGCCTTTCTCCGATGGAGGGGCCACGGCTTCCTCCTTCCGCCACCTTCCATGAATCCGACG
ATGACAAACCCGACGATCCTCCTCCCACCTGGCACCGTCCAACCTCGAGTCTCTCCGCATTGCCATCTCAAGATCCTCCACCACAG
CATTGGCGTAATCATTCTCTTAATCTCTCCCCAATCCTGGACACACCTCAACGGTCTCTTCCTCCTCCGGATTCAATCCCTGAGCT
AGAGACTTACGTTGTCCAGGTACCAAGAGATCAAATCTATTGGACTCCTCCTCCGGAACACGCAAAGTACGTCGAGAAACTCCGTA
ATAACCCGGAGAAAAACAAAAAGAATGGGTGTGCTAAACGTCTTATGTGGTTCTTTATCATCTTGGTCGTCTTTGGGTTCATCCTC
GGTGCCATCACTCTCATCCTTCATCTCGTTTTCAACCCCGCTCTTCCCGTTTTCGCGGTCGAGAGATTAACTGTAAAACCAAGTTA
CTTCGAGGTCACGTTGAGAGCTGAGAATCCCACGTCTAACATGGGGGTAAACTATATGATGAAACCAAACGGTGTCGTTTCGTTAA
CGTACAAGAACAAGAGACTGGGACGCGGGAAGTTCCCAAAGATGTCCCAGGCCGCGTCTGGATCCGACAAGGTCAATGTGAAGCTG
GATGGATCAACCAAAAACGCGGTTATGCCACCTCGGGGATCGAAACAACCGGTGGGTTTGGTGCTTAAGATGGAGCTAAAGGCGGA
TTATGAAGCAGGTCCAGTGAAGAAGAACAAGGAAGTGGTGGTGACTTGTGATGTTAAGGTTAAAGGGTTATTAGATGCCAAGAAGG
TGGAGATTGTGTCTGAGAATTGTGAGAGTGAGTTTAAGGACTGACACTCTCTATATATTTTTTTGTTATATATATGACGTGATTAT
GTCGTTAGATCTACAGTGTGCTTCAATAATTTATTACTTTCGATATAATGCTCAATTGTTCTGTTTTTTTTTCTGCCCCAAATGTC
TTTGTTTTTAGTCACTATTATTGAGCGACAAAAAAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002878602 hypothetical protein ARALYDRAFT_900669 [Arabidopsis lyrata subsp. lyrata]12782e-138
NP_179808 hydroxyproline-rich glycoprotein-like protein [Arabidopsis thaliana]12612e-136
ABK28506 unknown [Arabidopsis thaliana]12612e-136
XP_002866881 hypothetical protein ARALYDRAFT_490757 [Arabidopsis lyrata subsp. lyrata]3695e-033
NP_680775 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]3661e-032

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
A0MEP1 Putative uncharacterized protein (Fragment)12611e-136
Q9SIE6 Hydroxyproline-rich glycoprotein family protein12611e-136
Q3E7T6 Putative uncharacterized protein At4g39745.13668e-033
B9T4H5 Putative uncharacterized protein2726e-022
B9RJH9 Putative uncharacterized protein2592e-020

Arabidopsis top hits (Blast detail)Scoree value
AT2G22180.1 hydroxyproline-rich glycoprotein family protein12625e-139
AT4G39745.1 hydroxyproline-rich glycoprotein family protein3664e-035
AT2G27080.1 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related1863e-014
AT2G27080.2 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related1863e-014
AT5G21130.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced protein-related / HIN1-related / harpin-responsive protein-related (TAIR:AT2G27080.2); Has 592 Blast hits to 591 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 592; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1811e-013

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
104  44%
 
63  33%
 
72  22%

Unigene MembersMember information