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Information for unigene UN19887
| FASTA Sequence |
| Unigene ID: UN19887 | Length: 901 |
| SNP | CTCTTGAAGATTTTCTGCTCACTCTCCGCCGTACCTCTCACCCGCGACGCTTCACGATCTCAGCTATGGCCGCCGCCGCGGAAATC
GACGCTGAGATTCAGCAGCAGCTCACCAACGAGGTCAAGCTCTTCAACCGCTGGACCTACGACGACGTTTCGGTCACAGATATCAG
TCTTGTTGACTACATTGGAGTTCAGGCAGCTAAGCACGCCACCTTCGTCCCCCACACAGCCGGAAGATACTCCGTGAAGAGATTCA
GGAAGGCTCAGTGTCCCATCGTCGAGAGGCTCACAAACTCTCTCATGATGCACGGGAGAAACAACGGAAAGAAGTTGATGGCGGTT
AGGATCATCAAGCACGCCATGGAGATCATCCACCTCTTGACCGATGCCAACCCAATCCAGGTCATCATTGATGCCATTGTTAACAG
TGGTCCTCGTGAAGATGCTACAAGAATTGGATCCGCTGGTGTTGTTAGGAGACAAGCCGTTGATATCTCCCCTCTAAGACGTGTGA
ACCAGGCTATCTTCTTGCTTACAACCGGTGCTCGTGAGGCTGCTTTCAGGAACATTAAGACTATTGCTGAGTGCCTTGCTGATGAA
TTGATCAACGCAGCCAAGGGCTCCTCCAACAGCTATGCCATCAAAAAGAAGGATGAGATTGAGAGAGTTGCCAAGGCTAATCGTTA
AGGAGTTTCCTTTTGCCCTGAGGGTTATAATTTTTATCAAATCAATTTTATGCTCTTTTTTCAACTAGATTGGGACGTGTTTCAGA
TGTCTTGTTCTTTGAAGTTTATTTTGTCTGGACGACTTTGAATAGATACATTTATATTTATTTATTTCGATATGCTCTACAAGGAG
CAGAGCACGTTACTTTGGTAATTATAATCTTAAAGCTTCTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_187800 40S ribosomal protein S5-2 [Arabidopsis thaliana] | 1002 | 1e-106 |
| NP_181264 40S ribosomal protein S5-1 [Arabidopsis thaliana] | 1002 | 1e-106 |
| AAM66936 40S ribosomal protein S5 [Arabidopsis thaliana] | 995 | 9e-106 |
| XP_002881500 ATRPS5B [Arabidopsis lyrata subsp. lyrata] | 986 | 1e-104 |
| XP_002531594 40S ribosomal protein S5, putative [Ricinus communis] | 923 | 2e-097 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZUT9 40S ribosomal protein S5-1 | 1002 | 6e-108 |
| P51427 40S ribosomal protein S5-2 | 1002 | 6e-108 |
| O65731 40S ribosomal protein S5 (Fragment) | 899 | 5e-096 |
| Q5E988 40S ribosomal protein S5 | 789 | 3e-083 |
| P46782 40S ribosomal protein S5 | 789 | 3e-083 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9T025 40S ribosomal protein S5, putative | 923 | 1e-097 |
| B9T7U3 40S ribosomal protein S5, putative | 920 | 3e-097 |
| A9NRE6 Putative uncharacterized protein | 903 | 3e-095 |
| C6SX30 Putative uncharacterized protein | 894 | 3e-094 |
| C6SW88 Putative uncharacterized protein | 892 | 5e-094 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G37270.1 ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome | 1003 | 4e-109 |
| AT2G37270.2 ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome | 1003 | 4e-109 |
| AT3G11940.1 ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome | 1003 | 4e-109 |
| AT3G11940.2 ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome | 1003 | 4e-109 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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