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Information for unigene UN19920

FASTA Sequence
Unigene ID: UN19920Length: 1650  SNP
CTGCATTAAACCCTAATACCCTCTGCTTCTTCTGCCTCTCTCTCTAACCTCTCAGCGAAGAAAGAATGTCGATTCCTTGTCTGACC
GAAGAGACGGCCAAATCAGTGCTACGCCAGGTGGAGTTCTACTTCAGTGATAGTAATCTCCCGATTGATGATTTCCTCAAGAAGAC
TGTTAGAGAGAGTGAAGATGGATTGGTTAGTTTGGGGTTGATATGTTCCTTCAGTAAGATGAGAGCGTATTTGAAGTTGGGTGATT
CCAAAGGAGATGAGGTTCCTGAAGATACCATCAAAGCTGTTGCTGATACTCTTCGCACCTCCAAGGCTCTCAAGGTTTCTGAAGAT
GGGAAAAAGGTTGGTAGGAGTACAGAACTGTTGAAGCTAGAAGATTTGATTGAACAGCTTAATGCTAGAACTGTAGCTGTTTCACC
CTTCTCGTATGATGTTAAGAGGGAAGACGTGGAAGCATTCTTCAGTCAGTACGGAAAGGTTAATAGTGTGAGGATGCCTCGTCATG
TAGCTGAGACGAGAGTGTTTAGTGGTGTTGCCTTGGTTGAGTTCCCTACTGAAGAGGAGGCCCAGAATGTTATGAAGCAAAGTTTG
GTCTTTGCTGGTCTCGAGTTGGAGATGAAAACAAAGAAAGAGTTTGATGATGAAAGAGAGAAAGATGAAGAAAAGTTTGCTAACTA
CCGTCCTCAAAAGCTTCTGCAAATCAGAAGAACGGCTCTGACCATAGGAACGGTTCTGAATCCGAGGCAAACTATCCCAAGGGTTT
GATCATTTCCTTCACTCTGAAGCGCTCAACTGAAGAAGGTGCTAAAGAAAAGAGTTCTGAGGAGGCAGCTGATAAAAAAATGGAGG
AAAGTGAATCAAAGCCGGAAGATAATCCTGCTGCGGACAAAGAAAACACTGATCAGGCACAGGGACAAGGAACAGAGGGGGAAGAT
GATGATGAGTCTTCTGATTCTCCAGTTAAAAAAGGAGAGGGTGCTCTAGCTACCCATAAAGATAATAAAGATGTTGTCTTGCGTGA
AGATCTTAAGGCTGTATTTGGAAAATTCGGTGATGTCAAGTTTGTGGATTTCAAGATGGGATTTGAGACGGGTTACCTAAGGTTTG
ATGAACCAGAAGCATCCCAGAAAGCCCGTGCTGCTGCAGTATTAGCTAAAGAAGGCGGACTAGCCGTGAAGAATTTTATAGCTGTC
TTAGAACCTCTTACAGGCGAAGCTGAAAAGGAGTACTGGGGTTTTCTTCGCAGCAAAGACAGGTTTGACAAGGGTGGCCGTGGAGG
AAGGGGAGGAAAACGAGGAGGAGGGAGATTCGGGAGAAAGAGGGGATCTGATTCCCCGGGTGGTCGCTGGAACAAATCTCAGAAGG
TGGAAGCATGATTACACACATTGTTTCTACTCTCGTTTTCTCTTTTATAGCTCGTGACTTGTTGCTTCTGCTTTATCTATGTGTAA
CCTCACAGCCGAAACCTTTTATCATCTACTTGTGACATGTTGTGATGCTATAACTATAAATCAGCAATTAAATTTTGCTTAGATCA
TATTTGGTTTCATTTCTATTTCTGGAAAGGATTTATCAGTCTTTCCCTTTTTTTATGTTTGATTTTCTCCTTGCATATATTAGGCG
TGTCTTTCTCTTTCCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_001031777 La protein 1 [Arabidopsis thaliana]9792e-103
NP_567904 La protein 1 [Arabidopsis thaliana]9792e-103
AAM96968 putative protein [Arabidopsis thaliana]9792e-103
XP_002869250 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]9737e-103
CAN66913 hypothetical protein VITISV_007260 [Vitis vinifera]7112e-072

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q2V2Q6 Putative uncharacterized protein At4g32720.29791e-103
Q8L7E4 Putative uncharacterized protein At4g327209791e-103
Q93ZV7 Putative uncharacterized protein At4g327209791e-103
A5AMP9 Putative uncharacterized protein7111e-072
B9RS49 Lupus la ribonucleoprotein, putative6993e-071

Arabidopsis top hits (Blast detail)Scoree value
AT4G32720.1 AtLa1 (Arabidopsis thaliana La protein 1); RNA binding9795e-106
AT4G32720.2 AtLa1 (Arabidopsis thaliana La protein 1); RNA binding9795e-106
AT1G79880.1 La domain-containing protein5494e-056
AT1G79880.2 La domain-containing protein3756e-036
AT1G79880.3 La domain-containing protein3756e-036

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  15%
 
112  15%
 
63  23%
 
95  38%
 
71  8%

Unigene MembersMember information