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Information for unigene UN19932

FASTA Sequence
Unigene ID: UN19932Length: 1183  SNP
CGGAAGAATAAATTGTTTTTATTCGAATAATATTCCCCACGTAATCTCATACGTAACTATAGTTAACACCATACATATTTTAAATA
ATAATAAAAAACATACATATTTTTTAATTGTGGAAAATTATTAACACAAGCAATCCACTTCTAGTTAATTAACATATATATATAGG
ATCATATACAATTATTTAATCTTATCAATGGATTGATACTTTCGACCCTCTTCTGATTTGTTACTAATCGTCTTTCGTTCCTCCCT
TCTGCTCAGCTTCCTCCGTAATCTGCTGAAGAAGCTTCTTATGGACTCGATAACCTTTGTCGGTCCCATAGATATAGTCGCAATAA
GTGAAAACCGAAGCAAAGTTACTCTGGCTTTGTCCTCCAACGTAGTGATGATAATCATGATACTCAGCTCCACCGTAGAACGGAAC
AAGTTTTGTCAGAGCCCATGGAAAATCATATCCGCTGTGAGTTTCTATAGCCTCCATTTGACGTAAAGTTATCCACAACCAAAAGG
TCATAATGTGGCCAGGTGCAATCGCCGGTCCAAGAAACGTCGGAATACCAAGAAGCAAGACCTCGGCCCAATGTGCATAAGGTGAT
GCATATCCGATTGGAGAAGTGTACTCGTGGTGAACTCGATGTATCATCTCATAACCCCATTTGCAATGCAACCATCTATGGATCCA
GTAGTTAGTGTAATCTTCTATCAAGAAGTAAACCACTAATTGTGCTACAGTCTCCATTAACGATGGTAATGGCAACCCACTTCGAA
TCCCAACCAGCTGGATGGAAGGATAAGTAACGAATTGCAACGTGCCGACTACAAGAAGGAACAGCTTCATGACATCTTTATAACAC
CGAAACATATCAGACAATGAATACTTCATCTTAGGCTGAATCTTGAACCGCTCAAACCAGCCAGTCAATTCAACAAACACAAAAGG
AAGAGGAGCGAGAGAGAAGACGAGGAAGAGTACTAAAATGGTGTGGCAGTAAACATGGAAATCAGATTTGGTGGCTGAGTAATCAA
ACCAAACAGTCTCGAACCAAGTCAGGTTCCGTCCTAAAGCTACGGACGCGTCTCGGACGGTTGGGTGAGGGATCATACTTTGAGAG
CTAGTTTGGTACTCTTGTATATTTTATCACTTTAATGTATATACCGCAATGTTTTGGAGTTGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_567669 sterol 4-alpha methyl oxidase 1-3 [Arabidopsis thaliana]14252e-155
NP_001190801 sterol 4-alpha methyl oxidase 1-3 [Arabidopsis thaliana]14215e-155
AAQ94118 sterol-4-alpha methyl oxidase [Arabidopsis thaliana]13794e-150
XP_002872644 hypothetical protein ARALYDRAFT_911602 [Arabidopsis lyrata subsp. lyrata]12782e-138
NP_567670 sterol C4-methyl oxidase 1-2 [Arabidopsis thaliana]12683e-137

Swiss-Prot top hits (Blast detail)Scoree value
Q55D54 Putative C-4 methylsterol oxidase DDB_G02697884822e-047
Q55D52 Putative C-4 methylsterol oxidase DDB_G02709464741e-046
Q9UUH4 C-4 methylsterol oxidase4302e-041
P53045 C-4 methylsterol oxidase4194e-040
O59933 C-4 methylsterol oxidase4122e-039

TrEMBL top hits (Blast detail)Scoree value
Q5J909 Sterol-4-alpha methyl oxidase (Fragment)13793e-150
Q1EC69 At4g2275612682e-137
Q8L7W5 AT4g12110/F16J13_18012673e-137
Q8LB57 Putative C-4 sterol methyl oxidase12663e-137
Q71V05 Sterol-4-methyl-oxidase12638e-137

Arabidopsis top hits (Blast detail)Scoree value
AT4G22753.1 SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3); 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase/ catalytic14265e-158
AT4G22756.1 SMO1-2 (STEROL C4-METHYL OXIDASE 1-2); 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase/ catalytic12699e-140
AT4G12110.1 SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1); 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase/ catalytic12681e-139
AT1G07420.1 SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase5896e-061
AT2G29390.3 SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase5717e-059

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
1010  67%
 
64  27%
 
71  7%

Unigene MembersMember information