Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN19936

FASTA Sequence
Unigene ID: UN19936Length: 872 SSRSNP
GGGGCTGTAATGGCACAAGTTTCTATGAGGAACTTTCAGTGCGTTGGATAGCCTGACACGAGAAAGCTGATCTTACCCGTTACTTA
CTTGTATATTACAATCGCCGTTTAAGAATATTTGGAAGCCCTTCTCTCTCTCCTTGAACACACACACACACACACGACACGCGTGA
ATACAATCTCCCATGGCTGCATTTGCAACAGCAGAAGCGTGTGACAGCAACGCAGAACTAATATCAAACGGAGACCTACGGGCTCT
CCAACCAACCTTCAAGATCTATGGACAAAGAAGATGCTTCTCCGGACCAATCGTGACACTCAAGGTCTTTGAAGACAACGTCCTAG
TCAGAAACCAACTAGAGACAAAAGGAGAAGGCGCGGTCTTAGTTATAGACGGTGGTGGAAGCATGAGGTGCGCACTTGTTGGAGGA
AACCTCGGACAGTTAGCTCAGAACAACGGGTGGGTAGGGATTTTGGTGAATGGGTGCGTTAGAGATGTGGATGAGATCAATGACTG
TGATGTTGGGGTTAGGGCATTGGGTTCTAACCCGTTGAAGTCTAGTAAGAAAGGTCAGGGTGAGAAGAATGTGCCGGTTTATATTG
GAGGGACTTTGATTAGGGATGGTGAATGGCTTTATGCTGATAGTGATGGTATCTTGATCTCCAAGACCGAACTCTCCGTCTGATCC
AGAATGTTCTTCTGCTAAGAGATTACTGTTGGAGCTGGTTTATGTGGAATTAGTAATATTCGGTTTAATATTCTCAGATGAAAACG
TTTTCTGCAATTTGTGAAACAATATAATAATTACAAAATGTTGTTATTTTTTTTTATTCGAAACGAGCTGAAACCTTTATTTATTT
TGTTACTTCTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_200437 Regulator of ribonuclease-like protein 3 [Arabidopsis thaliana]8229e-086
XP_002866134 dimethylmenaquinone methyltransferase family protein [Arabidopsis lyrata subsp. lyrata]8156e-085
XP_002529206 Regulator of ribonuclease activity A, putative [Ricinus communis]7242e-074
XP_002265968 PREDICTED: hypothetical protein [Vitis vinifera]6939e-071
CAN79693 hypothetical protein VITISV_040370 [Vitis vinifera]6883e-070

Swiss-Prot top hits (Blast detail)Scoree value
Q9FH13 Regulator of ribonuclease-like protein 38224e-087
Q9FFE0 Regulator of ribonuclease-like protein 26102e-062
Q9M8R9 Regulator of ribonuclease-like protein 16048e-062
Q46ZV6 Regulator of ribonuclease activity A5152e-051
B2SXN2 Regulator of ribonuclease activity A5062e-050

TrEMBL top hits (Blast detail)Scoree value
B9ST87 Regulator of ribonuclease activity A, putative7242e-074
A5C5H1 Putative uncharacterized protein6882e-070
B9N5J4 Predicted protein6774e-069
B6SMX7 Putative uncharacterized protein6481e-065
B6T0A4 Regulator of ribonuclease activity A6471e-065

Arabidopsis top hits (Blast detail)Scoree value
AT5G56260.1 dimethylmenaquinone methyltransferase family protein8233e-088
AT5G16450.1 dimethylmenaquinone methyltransferase family protein6111e-063
AT5G16450.2 dimethylmenaquinone methyltransferase family protein6111e-063
AT3G02770.1 dimethylmenaquinone methyltransferase family protein6056e-063

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
86  60%
 
103  30%
 
51  10%

Unigene MembersMember information