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Information for unigene UN19952
| FASTA Sequence |
| Unigene ID: UN19952 | Length: 691 |
| SNP | GGGGACGTTTGTATCCGGAAGAAGAAGTAAAGAAAAAAGATCGAAAGATCTGAGAGAGAGGAAGGCAAAGGAAGATGGGAATAAGG
TTCATATTAATGGTGAACAAGCAAGGCCAGACTCGCCTTGCTCAGTACTACGAATGGCTCACCCTCGAGGAACGTCGTGCTCTCGA
AGGCGAGATCGTTCGTAAATGCCTCGCTCGCAACGACCAGCAGTGTTCGTTTGTGGAGCATCGCAACTACAAGATCGTCTACAGGC
GTTATGCGTCTCTCTTTTTCATGGTTGGCGTTGATGACGATGAAAACGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGAG
ACTATGGACAAGCATTTTGGAAATGTGTGTGAGCTGGACATAATGTTCCATCTGGAGAAAGCTCATTTCATGCTCGAGGAAATGGT
GATGAATGGTTGCATTGTCGAGACTAGCAAAGCCAACATACTTTCGCCTATACAGCTCATGGACAAAGCCCATTAATTTTCAAAAG
ACTTGTTCTTTTCCTTTTCAGCACACTGTTGAGACAACTTCTGTAATATTATTACTTCTTCACTCGTTTGTCCCATTCGAATCTAA
AGAACAATTTGTTTTCTTCCATGCTTTGAATGTTAGTGGTTAGAGTAGGGATGTTATGTGGGGAAGATCCCCCCATCTAGACTCAC
GTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_179569 AP-4 complex subunit sigma [Arabidopsis thaliana] | 747 | 3e-077 |
| XP_002514188 AP-4 complex subunit sigma-1, putative [Ricinus communis] | 721 | 3e-074 |
| XP_002308286 predicted protein [Populus trichocarpa] | 720 | 4e-074 |
| ACU14036 unknown [Glycine max] | 709 | 7e-073 |
| XP_002283179 PREDICTED: hypothetical protein [Vitis vinifera] | 694 | 4e-071 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9Y587 AP-4 complex subunit sigma-1 | 464 | 9e-046 |
| Q3ZBB6 AP-4 complex subunit sigma-1 | 462 | 2e-045 |
| Q9WVL1 AP-4 complex subunit sigma-1 | 454 | 1e-044 |
| Q54NZ4 AP-4 complex subunit sigma | 419 | 2e-040 |
| Q9P7N2 AP-1 complex subunit sigma-1 | 371 | 6e-035 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O82201 Putative clathrin assembly protein | 747 | 2e-077 |
| B9RKE4 AP-4 complex subunit sigma-1, putative | 721 | 2e-074 |
| B9H8U9 Predicted protein | 720 | 3e-074 |
| C6SXR3 Putative uncharacterized protein | 709 | 5e-073 |
| B8BAI0 Putative uncharacterized protein | 669 | 2e-068 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G19790.1 clathrin adaptor complex small chain family protein | 748 | 1e-079 |
| AT1G47830.1 clathrin coat assembly protein, putative | 327 | 7e-031 |
| AT2G17380.1 AP19; protein binding / protein transporter | 318 | 7e-030 |
| AT4G35410.2 clathrin adaptor complex small chain family protein | 316 | 1e-029 |
| AT3G50860.1 clathrin adaptor complex small chain family protein | 285 | 5e-026 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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