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Information for unigene UN19953
| FASTA Sequence |
| Unigene ID: UN19953 | Length: 1300 |
| SNP | GCTCAGATTCAGCTCTAACCATGTTATTCTTTTATTTTTTTTGTGTTGAGGGGAAGCTCTCCATGGTTCACGAGCAATCAATATCC
AGAAACAATTTAAAAGTACAAAAACTAATCAAATGAGACGGTTCAACAACACTTCAAAGACAACATAGAAGAAAAATCAAATCTCT
CTCTAGAACTCTCCTCTTCCCTTCTACAAGACAGGAATTGGATCCTCCATGGCTTCTTCAGCAACAAAACCGTCACCACTTCCATT
CTTACCATTCAACACAACCACACTTCCTTCAGCATCAACATCAACAATCACAGAATCTCCATCTTTAATCTCCCTTGAAAGCATCT
TCTCCGCCATGCTATCTTCCAAAAGCCTCATTATCGCTCTTCTCAGCGGCCTCGCACCGTAACTCGGGTCAAACCCTTCATCCACC
ACTCTCTCCTTAAACCTCTCGGTCACTTGAAGCTCAATCTCCTTGTCCTTAGCCTCACCACCACTTCTTTAAGCATTATATCAGCA
ATCTCCTTCACTTCGAGCTTCGTCAACTGTCTGAAAACAATCATCTCATCTAACCTGTTCAAGAACTCAGGTCTGAAATACTGTTT
CAGTTCCTCAGTCACCAAGCTCTTGATCCTGTTGTAGCTGCTGTCTTTCTCGTCGTAGTCCAGATCAAACCCGATTCTTCTACCAC
CCTTTTCAATCACGCTGCTTCCTACGTTCGATGTCATGATCAGTAGCGTGTTCTTGAAATCAACGGTTCTTCCTTTGCTGTCAGTT
AGTCTCCCGTCTTCTAGGATCTGAAGCATCATGTTGAAAACATCAGGGTGAGCTTTCTCGATTTCGTCGAAGAGGACAAGCGTGTA
AGGCCTGCGTCGAACCGCCTCGGTTAGCTGACCACCTTCCGTGTATCCTACGTAACCAGGAGGCGAACCGATGAGTTTCGAAACCG
TGTGACGTTCCATGAACTCACTCATGTCGAGACGGATCATCGCTTCCTCTGAACCGAAGTAGTAAGCAGCCAAGGCTTTGGCAAGC
TCTGATTTCCCCACACCGGTTGGACCAGAGAAGATGAAACTCGCTATGGGGCGGTTCGGGTTCTTGAGTCCAACACGTGCACGTCT
GATGGCCCTGCTGATGGCTTTGACGGCTTCGTCTTGGCCAATGACTCTTGTGTGAAGGGTCTGCTCCATCTTGAGAAGACGGCTAG
ACTCATCAGAGGAGACTTTCTCCACCGGGATTCCTGTCCAGGTGGAGACGATGTGCTGGATGTCAGATTCGGTGACGTTAGGTCCC
CCTTCTTCGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_566912 Clp ATPase [Arabidopsis thaliana] | 1356 | 2e-147 |
| CAB87915 AtClpC [Arabidopsis thaliana] | 1356 | 2e-147 |
| NP_001190035 Clp ATPase [Arabidopsis thaliana] | 1356 | 2e-147 |
| XP_002877635 AtClpC [Arabidopsis lyrata subsp. lyrata] | 1355 | 3e-147 |
| AAD02267 ClpC protease [Spinacia oleracea] | 1321 | 2e-143 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P31542 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic | 1315 | 5e-144 |
| P31541 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic | 1314 | 7e-144 |
| P35100 ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic | 1310 | 2e-143 |
| P46523 ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) | 1237 | 6e-135 |
| O78410 ATP-dependent Clp protease ATP-binding subunit clpA homolog | 1116 | 6e-121 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9M2Z6 AtClpC | 1356 | 1e-147 |
| Q9SXJ7 AtClpC | 1356 | 1e-147 |
| O98447 ClpC protease | 1321 | 2e-143 |
| C5YF84 Putative uncharacterized protein Sb06g014590 | 1320 | 2e-143 |
| Q9FI56 AT5g50920/K3K7_7 | 1320 | 2e-143 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G48870.1 HSP93-III; ATP binding / ATPase/ DNA binding / nuclease/ nucleoside-triphosphatase/ nucleotide binding / protein binding | 1356 | 8e-150 |
| AT5G50920.1 CLPC1; ATP binding / ATP-dependent peptidase/ ATPase | 1320 | 1e-145 |
| AT5G51070.1 ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | 914 | 1e-098 |
| AT2G25140.1 CLPB4 (CASEIN LYTIC PROTEINASE B4); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | 821 | 9e-088 |
| AT5G15450.1 CLPB3 (CASEIN LYTIC PROTEINASE B3); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | 810 | 2e-086 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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