Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN19955

FASTA Sequence
Unigene ID: UN19955Length: 860  SNP
TTTTTACAGATGAACACACATACATAACAAGTAACAAGAGTCTCAAAGATAAATAAACGAAATCAATATAATTTCTTTTTTATGCT
TCTCTTCTGATAAAATCTAAGTATACAAGAAAGATTAAAAGATCTTAAGCAGTACGAATAAGCAATTGTATAGTAAAAAATGTAAA
GAGAATATTCAGGAACGGCGAGCAGCGGAGGCAGTTAAGACTGTAAGGATGAACAAGAGTAGAAAAGAGACGAAGGAAAAAGCGAG
TGAGAGTGTAACACGATTGCAATAGTTATGAACATAGCCGCAGATCGGAAGCCAACCGGCGTGTGTATTACCATACTTTCCGATGT
AACCCTCCGACATGGACGCAGAGAAAGCCGATAACGCCGTCAAAGCCATAAGCAAATCAATGACGAAGAGTGCAAAAATAAATCCT
CCTCTACGGACAGCCAAACAAGCCCATGCGAGCGTAAACAACGTTACGGCGGCGATAGCTATATATGCGTAGACCAAATACCTAAA
GGCAGAGGAGTCGCTGTATTTAGCTTCAAAAGCAATGCCATAAACAGAGGCCACTTCACGGTTAGTGATCATGAGCCCCATGGAGG
CTAGTGCAGCGCCGACGGTTAACACTCTCATCGACACTTGAACCTTAAGATTCATTAATGTTCTTTTCCCTTCATTGTCTCCCATT
ATTACTCAGATTCAAACTTTACTTTCCTTGTTAATTGCTGAAAATGTATAGAAAAGGGGACAAATGATACAAATAAGACAAAGATA
TGGTTGTTGTTGTTTGGTTGTTTGGTGTGGTGTAAGATCCCGAAACTCCAAGAAGACAAAAGAAAGATAAGAGAAATGGTCTCCCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_194234 uncharacterized protein [Arabidopsis thaliana]6741e-068
AAM63685 unknown [Arabidopsis thaliana]6732e-068
XP_002869692 integral membrane family protein [Arabidopsis lyrata subsp. lyrata]6614e-067
CAB36746 putative protein [Arabidopsis thaliana]5673e-056
XP_002280714 PREDICTED: hypothetical protein [Vitis vinifera]3156e-027

Swiss-Prot top hits (Blast detail)Scoree value
Q9M0L3 UPF0497 membrane protein At4g250406746e-070
A7PHN8 UPF0497 membrane protein 83153e-028
B9RA90 UPF0497 membrane protein 112982e-026
B9IFI5 UPF0497 membrane protein 12858e-025
Q9ZT81 UPF0497 membrane protein At4g035402491e-020

TrEMBL top hits (Blast detail)Scoree value
B9I3X5 Predicted protein2877e-024
B9N5U6 Predicted protein (Fragment)2439e-019
B9N3F4 Predicted protein2421e-018
B9H2V1 Predicted protein2213e-016
B9PBA8 Predicted protein (Fragment)1927e-013

Arabidopsis top hits (Blast detail)Scoree value
AT4G25040.1 integral membrane family protein6745e-071
AT4G03540.1 integral membrane family protein2491e-021
AT1G03700.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G03540.1); Has 260 Blast hits to 260 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2167e-018
AT2G36100.1 integral membrane family protein1683e-012
AT5G06200.1 integral membrane family protein1631e-011

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  9%
 
912  55%
 
116  27%
 
122  9%

Unigene MembersMember information