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Information for unigene UN19978
| FASTA Sequence |
| Unigene ID: UN19978 | Length: 895 |
| SNP | GGAGGTAACTTAGTGTATGTTCCACTTAATTATTCAATCAGAGTAAACCAAATAGATGAAACTCATACACGAAGAGTGGAATTAAT
ACACTGTATAAAAAGAAAAATCAATTAACCATAAAGAGAAAATGTGAAAGGTTCATAGTTATGCGATTCGGTTCCTGACATTTCCT
CTTTAACTTGGAGGTTTCTCAGTAACTTTCTGGGCAATCCAGCCAAGCCCATCATGCAACCCTTCTCCAGTGACTGCACAGCTCGC
TTGAATGTGCCAATCATGGTTCTTGATGCTGTGAAGGTTAAGCGCGTCCGTGATCTCAGCTGGGCTCATAGCGTCCTTCAGGTCCT
GTTTGTTTGCGAACACGAGTATCACCGAGTTCTGAAGATCCTCGTGCCCGAGCAATCTGGATAGCTCATCTTTCATCAAAGAGATC
CTGGCTCTGTCTGTGCTGTCGATAACCACGATCACAGCGTTGGTTCCTCTGTAGTAAGTTGCCCATGATGTTCTGAGCCTATCTTG
CCCACCAAGATCCCAAACCTCGAAGCGGATGTTCTTGTAAACGAGCTCTTCGACATTGCTTCCAACAGTAGGATGAGTGGTGACAA
CTTCACCCAAGTGGAGCTTATAAAGCGTCGTCGTTTTGCCGGCGTTATCCAAACCAACGACGACGATCTTATACTCTTTCGCAGGG
AACATCATGAACCAAAACCTCGATGCGAATGCTCCCATCCTCTCTCTCTTCTGACTTGATTTAGCAGCAAGTGGCGGAGGCAACGG
CGATGGTGCGTGGTTTGATCTGAATCGGGAAAATATGAAAATTTTAGTTTGGGAGGTTTGCTTGCTTATCGATCTGGGTGGGATGG
GGGTATCGTGGGATTGTTGAAAAGTATGCGAGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_188935 ADP-ribosylation factor C1 [Arabidopsis thaliana] | 911 | 5e-096 |
| XP_002885533 ADP-ribosylation factor C1 [Arabidopsis lyrata subsp. lyrata] | 907 | 1e-095 |
| XP_002322463 predicted protein [Populus trichocarpa] | 887 | 3e-093 |
| XP_002517045 ADP-ribosylation factor, putative [Ricinus communis] | 880 | 2e-092 |
| XP_002283837 PREDICTED: hypothetical protein [Vitis vinifera] | 874 | 9e-092 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q55AD9 ADP-ribosylation factor-like protein 5 | 586 | 1e-059 |
| P11076 ADP-ribosylation factor 1 | 545 | 6e-055 |
| P19146 ADP-ribosylation factor 2 | 544 | 8e-055 |
| Q9Y689 ADP-ribosylation factor-like protein 5A | 537 | 5e-054 |
| P51646 ADP-ribosylation factor-like protein 5A | 537 | 5e-054 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LIK1 ADP-ribosylation factor, putative | 911 | 3e-096 |
| A9PG62 Predicted protein | 887 | 2e-093 |
| B9RTH6 ADP-ribosylation factor, putative | 880 | 1e-092 |
| B9I4A4 Predicted protein | 866 | 5e-091 |
| C6T2I8 Putative uncharacterized protein | 851 | 3e-089 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G22950.1 ATARFC1 (ADP-ribosylation factor C1); GTP binding | 912 | 1e-098 |
| AT1G10630.1 ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F); GTP binding / copper ion binding / phospholipase activator/ protein binding | 522 | 2e-053 |
| AT2G47170.1 ARF1A1C; GTP binding / phospholipase activator/ protein binding | 521 | 3e-053 |
| AT3G62290.1 ATARFA1E (ADP-ribosylation factor A1E); GTP binding / phospholipase activator/ protein binding | 521 | 3e-053 |
| AT1G70490.1 ARFA1D; GTP binding / phospholipase activator/ protein binding | 520 | 4e-053 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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