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Information for unigene UN20000

FASTA Sequence
Unigene ID: UN20000Length: 649 SSR 
CTGGAAAATTAGCATGTAGATTAAAGTTGTTATCAATACTCAAGCTGCTTGTGTTCAAATAAAGCATACAAACTATAAATGAATGC
CAATAAGCTATGGTTTTGGTATCATGGCTTTGTAAGCTCATTCCAACACCCAATGGAGTAATCTTTTAAGTATAGATTGACAGCTT
CGAGAAAGAAACATACACCAAATCATATAAGTTTTTTATGAGAATTGAGTAACTCTCCAATCTTAGACGAAGATATCGTCTAACAG
ACAGCAGCAACAGAGAGTAGCGAGACAGCCACGGAGGAAAGAGGTGCAACCAGAGTTAGAGTCCTGGTAATAGTGATGATCATGAT
GACACTGATTGTATTGCTGCGGCGGAGGTGGAGGAGGAGGAGGAAAGCCACCGGAGAAGTACTCCTGATATCCCCCTTCGTAAGGA
GGACGTGAAGGCGGTCGTGGTGGTGGATACGATGGATATCCGTGTGGGTGTTGAGGATATCCTTCGTGATGGTGCGACGGAGGATA
TACCGGAGGCGGGGGAGGATACTGAGATTGGTAACCTGGAGGAGGATACGTTTCAGGCGGAACCTTCCCGTAGTCGTAGCTCATTA
TGATATCTTCTTTGAGAAAACTTGTTGCTTGGTCTGAGGGAGAATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002889972 expressed protein [Arabidopsis lyrata subsp. lyrata]4767e-046
ABQ50553 hypothetical protein [Brassica rapa]4122e-038
AAF78486 Contains weak similarity to GATA-6 DNA-binding protein from Homo sapiens gb|X95701. ESTs gb|N38392, gb|AI998367, gb|H36135, gb|Z26200 come from this gene [Arabidopsis thaliana]4077e-038
NP_563914 proline-rich family protein [Arabidopsis thaliana]4077e-038
ACU16034 unknown [Glycine max]3639e-033

Swiss-Prot top hits (Blast detail)Scoree value
Q9T0K5 Leucine-rich repeat extensin-like protein 31521e-009
O53426 Proline-rich antigen homolog1466e-009
Q7G6K7 Formin-like protein 31323e-007
Q5KKY3 Polyadenylation factor subunit 21304e-007
Q8S8M0 UPF0467 protein At2g414201296e-007

TrEMBL top hits (Blast detail)Scoree value
A5JVC8 Putative uncharacterized protein4121e-038
Q940Z6 At1g12810/F13K23_44075e-038
Q9LPW8 F13K23.6 protein4075e-038
C6T2Z6 Putative uncharacterized protein3636e-033
B9RH08 LRX1, putative3573e-032

Arabidopsis top hits (Blast detail)Scoree value
AT1G12810.1 proline-rich family protein4559e-046
AT1G12810.2 proline-rich family protein3958e-039
AT2G41420.1 proline-rich family protein1654e-012
AT4G13340.1 leucine-rich repeat family protein / extensin family protein1521e-010
AT3G22800.1 leucine-rich repeat family protein / extensin family protein1279e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  33%
 
103  50%
 
61  17%

Unigene MembersMember information