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Information for unigene UN20000
FASTA Sequence |
Unigene ID: UN20000 | Length: 649 |
SSR | | CTGGAAAATTAGCATGTAGATTAAAGTTGTTATCAATACTCAAGCTGCTTGTGTTCAAATAAAGCATACAAACTATAAATGAATGC
CAATAAGCTATGGTTTTGGTATCATGGCTTTGTAAGCTCATTCCAACACCCAATGGAGTAATCTTTTAAGTATAGATTGACAGCTT
CGAGAAAGAAACATACACCAAATCATATAAGTTTTTTATGAGAATTGAGTAACTCTCCAATCTTAGACGAAGATATCGTCTAACAG
ACAGCAGCAACAGAGAGTAGCGAGACAGCCACGGAGGAAAGAGGTGCAACCAGAGTTAGAGTCCTGGTAATAGTGATGATCATGAT
GACACTGATTGTATTGCTGCGGCGGAGGTGGAGGAGGAGGAGGAAAGCCACCGGAGAAGTACTCCTGATATCCCCCTTCGTAAGGA
GGACGTGAAGGCGGTCGTGGTGGTGGATACGATGGATATCCGTGTGGGTGTTGAGGATATCCTTCGTGATGGTGCGACGGAGGATA
TACCGGAGGCGGGGGAGGATACTGAGATTGGTAACCTGGAGGAGGATACGTTTCAGGCGGAACCTTCCCGTAGTCGTAGCTCATTA
TGATATCTTCTTTGAGAAAACTTGTTGCTTGGTCTGAGGGAGAATCC
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GenBank top hits (Blast detail) | Score | e value |
XP_002889972 expressed protein [Arabidopsis lyrata subsp. lyrata] | 476 | 7e-046 |
ABQ50553 hypothetical protein [Brassica rapa] | 412 | 2e-038 |
AAF78486 Contains weak similarity to GATA-6 DNA-binding protein from Homo sapiens gb|X95701. ESTs gb|N38392, gb|AI998367, gb|H36135, gb|Z26200 come from this gene [Arabidopsis thaliana] | 407 | 7e-038 |
NP_563914 proline-rich family protein [Arabidopsis thaliana] | 407 | 7e-038 |
ACU16034 unknown [Glycine max] | 363 | 9e-033 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q9T0K5 Leucine-rich repeat extensin-like protein 3 | 152 | 1e-009 |
O53426 Proline-rich antigen homolog | 146 | 6e-009 |
Q7G6K7 Formin-like protein 3 | 132 | 3e-007 |
Q5KKY3 Polyadenylation factor subunit 2 | 130 | 4e-007 |
Q8S8M0 UPF0467 protein At2g41420 | 129 | 6e-007 |
TrEMBL top hits (Blast detail) | Score | e value |
A5JVC8 Putative uncharacterized protein | 412 | 1e-038 |
Q940Z6 At1g12810/F13K23_4 | 407 | 5e-038 |
Q9LPW8 F13K23.6 protein | 407 | 5e-038 |
C6T2Z6 Putative uncharacterized protein | 363 | 6e-033 |
B9RH08 LRX1, putative | 357 | 3e-032 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT1G12810.1 proline-rich family protein | 455 | 9e-046 |
AT1G12810.2 proline-rich family protein | 395 | 8e-039 |
AT2G41420.1 proline-rich family protein | 165 | 4e-012 |
AT4G13340.1 leucine-rich repeat family protein / extensin family protein | 152 | 1e-010 |
AT3G22800.1 leucine-rich repeat family protein / extensin family protein | 127 | 9e-008 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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