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Information for unigene UN20005
| FASTA Sequence |
| Unigene ID: UN20005 | Length: 1875 |
SSR | | GAGGTCTCAGTGTTTCTTGGCGGAAATAAACCTTCTAGAACTGCGGATTTGCGTGGTGACATCAGTGTGAATTTTTCATGTGATCC
AGAAATCTCATCTAAACTGGTTGACCTAGCTTTGGAAGAAATTGTACGGCTTCAAGAGGAAGGCCCTTCGCAAGAAGACATTTCAG
TCATCCTTGAAATCGAACAAAGAGCTCATGAAAATGGCCTGCAGGAAAACTATTACTGGTTAGACAGGATTCTACGTGGATACCAG
TCAAGAGTCTACGCTGGCGATTTGGGCGCTTCATGCCAGATTTTAGAAGAAGGGCGTTTGCGAATGAGAGAGTCACTTGCACCACA
AACAGCACAAGCTGCATTACAGCGAATCCTTCCTCACCCCTGCAAAAAACAGTACACTGCTGTCATTCTCATGCCTCAGAAATCAC
GCTTTGGTTTTCTTTCCTCTATATTTGCTTCTCGCCCCGAGACCTCCTACATCCGTGACACCAAGATTTTGGCGGGCATTGCTGGT
CTAGCTGTTCTTGTTTTTAGCATCTGGAGATACTCTCGCAAGTAAAGTAAAGTCTAGTCTCTCTCTCTCTCTCTCTTTTTAGCGAA
CCTCAGCGTTTATTATTCAAGTTCTTATATATTTTTACAAGAGATTTCGAACCACAAATTTATTTGTTGCTACATTTTTTTGTGTG
CCATGGCTCTAGATTTTTTTTTAATTTCGTCTATACATTGAGACAAGAATAAGCTAAAGCCTTCTCTTCAGCTAGCTCTCTTGCAG
AGTCATCCATTTTCTCTCTGGAGAACTCGTCAATACTGAGTCCTTGTACGATCTTCCAACTCCCTTTCTCACAGATAACCGGAAAC
GAGTAAACCAAACCAGGTGGTATACCGTAGGAGCCATCCGAACAAACACCCATAGAAACCCAACTTCCTTTAGGTGTTCCAAGAAA
CCAGTCATGGATATGGTCACAAGCTGCGCTAGCAGCGGACAAAGCACTCGACTGTTTCCGTGCTCTTATAATCTCTGCACCACGTT
GCTGAACTTCTGTAATAAACTCATTCTTCAGCCACTTCTGATCAGCGACAAGTAGTTCTTTCGCCGGTTGATCTCCGGTCTTTGTA
GAGACCGTTGCATGACTGGTGTCTGGATACTGAGTTGAAGAATGGTTTCCCCAGACGATCACCTTCTTCACGCTGCTAACGGGAAC
ACTTAGCTTCTCCGCAAGGCGAGCTTGAGCCCGGTTATGATCGAGACGTGTCAGGCAAGTGATGTTTTCTTCCGGGATCGACGGTG
CAAACTCTCTCAAAATCAGAGCATTTGTGTTCGCAGGGTTGGCTACAACGAGAACCTTGCAATCATCTGATGCATATCGCTCTAAC
GCCGAAGCCTGAGCCTTATATATCACTGCGTTTTTCGACATCACGTCTTTTCTTTCCATGCCTTCTTTTCTTGCGAATCCGCCGAT
CAGTATGGCGATGTTCACACCGTTACAGGCTTCGTCAACGTTTGTTGTCGCGATAACGCCTTGGAGAAGAGGGAAGGCTGAATCTT
GAAGCTCCATCTTCACAGCTTCTAGTGATTTTGAAGCTGGTTCTATATCAAGTAAATGTAGAATCATGGGTTGGTCTGGACCTAGC
ATAACACCTCTTGCAATCATTGGAGCAATTGCATATCCTATGTTCCCTGCTGCACCAGTGATCAGAACCCTTATAGGTTCTTTCTC
AATCTTTAACAAATTGCACATGTATACAATCATTTTCCATGCCAACCCAACACATAACAATAGGACCAGAGTTTTCTGAATCACAA
AAGTATAATCTTCTCCTCCGACGACCTCCATTTTTTTAAACAAGTAAAATGTAATCAAGCAACGAATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_200483 malate dehydrogenase [Arabidopsis thaliana] | 1567 | 1e-171 |
| XP_002864476 hypothetical protein ARALYDRAFT_331971 [Arabidopsis lyrata subsp. lyrata] | 1542 | 9e-169 |
| ACU24400 unknown [Glycine max] | 1377 | 1e-149 |
| XP_002511634 malate dehydrogenase, putative [Ricinus communis] | 1342 | 1e-145 |
| XP_002301252 predicted protein [Populus trichocarpa] | 1321 | 4e-143 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q7XDC8 Malate dehydrogenase, cytoplasmic | 1292 | 4e-141 |
| Q08062 Malate dehydrogenase, cytoplasmic | 1289 | 8e-141 |
| O48905 Malate dehydrogenase, cytoplasmic | 1280 | 9e-140 |
| O24047 Malate dehydrogenase, cytoplasmic | 1266 | 4e-138 |
| P93819 Malate dehydrogenase, cytoplasmic 1 | 1250 | 3e-136 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FJU0 Malate dehydrogenase | 1567 | 8e-172 |
| C6TNA8 Malate dehydrogenase | 1377 | 9e-150 |
| B9RD45 Malate dehydrogenase | 1342 | 1e-145 |
| Q645N0 Malate dehydrogenase | 1322 | 2e-143 |
| B9GPA3 Malate dehydrogenase | 1321 | 3e-143 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G56720.1 malate dehydrogenase, cytosolic, putative | 1568 | 3e-174 |
| AT1G04410.1 malate dehydrogenase, cytosolic, putative | 1250 | 2e-137 |
| AT5G43330.1 malate dehydrogenase, cytosolic, putative | 1249 | 3e-137 |
| AT5G56730.1 peptidase M16 family protein / insulinase family protein | 890 | 1e-095 |
| AT5G58330.2 malate dehydrogenase (NADP), chloroplast, putative | 601 | 4e-062 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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