 |
Information for unigene UN20017
| FASTA Sequence |
| Unigene ID: UN20017 | Length: 695 |
SSR | SNP | GGGTCCCCAACCTATCATCGTCTCCTCTCTCTCTCGCTCGCTATTGAAACCCTAAAAATCAAAGCTTGAATTTCAGATCTTTAACA
GCTGTCTCCTCGAGGAGACGACTACTATGAGCAGCAGAGATCATCATCATCATCCACCCGAGCCTCTTGATTTCTTCATCTGGACT
GTTGAGGATGTTGGATCTTGGCTTGAGGAAATCAACCTTGGGAGCTACCGCTTGATTTTCAAAGAAAACGGCGTCAATGGAGAATA
TCTAGAAAGCATGTCTGTGTTTACAACCGAACAGATCCTTCATTTCATAAGGAGGCATCACATGAAATGGGGAGACTTCATCACTC
TCTGTAAAGAACTCAGAAGGATCAAAGTGGCTTGCTTGAAAGGCGAGCAGAGAGTTCGAAGGCCATGGTGGGCACCGTCTTGTCTC
TCGGTAGTCTTTGTTAAGGCGGCTAAGCGCAATCGACAGTCTCGAGTTGTATCTCTAAAGCTTGAATCTTGACAATTACACGTTGG
CTCTCTCTTTATGTACCTACTTGTCTCTCTTCTCATCCCTTTCTTTTCCTTTTTTTTTTTGGGTTGAGTTTGTTTGTAGAGATAAA
AGCTATATATGCACTATGAAAAAAACAAACTGGAGCCAAAATGCTGTTTGGCTTGTTAAAATCTTGCAAGGAGGGAAAAAATATAG
TTTTCGT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAF13094 unknown protein [Arabidopsis thaliana] | 644 | 3e-065 |
| NP_566319 Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana] | 640 | 8e-065 |
| XP_002882548 hypothetical protein ARALYDRAFT_896947 [Arabidopsis lyrata subsp. lyrata] | 640 | 8e-065 |
| XP_002272138 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] | 593 | 2e-059 |
| NP_001066883 Os12g0514600 [Oryza sativa Japonica Group] | 581 | 5e-058 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9S7Y5 F17A17.10 protein | 644 | 2e-065 |
| Q93VV3 At3g07760/F17A17.10 | 640 | 5e-065 |
| B8BM58 Putative uncharacterized protein | 581 | 4e-058 |
| Q0IN13 Os12g0514600 protein | 581 | 4e-058 |
| B9IAR7 Predicted protein | 576 | 1e-057 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G07760.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sterile alpha motif SAM (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif homology 2 (InterPro:IPR011510); Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | 641 | 3e-067 |
| AT3G07760.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sterile alpha motif SAM (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif homology 2 (InterPro:IPR011510); Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | 641 | 3e-067 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
