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Information for unigene UN20023
| FASTA Sequence |
| Unigene ID: UN20023 | Length: 856 |
| SNP | AGTAGAAAAACACCACTTAGCAACTAAGTTTATTGTGTTCCAAGTACATTACAAAGAATTGAGAAGCTTTTGGACATAGTGATTGA
AAAAAAAAACAACACATAAAATGAAGAAGAGAGACGATGTTCACATTCGGATTAGATAATATATGTGTTTTTCAAAAGAGAATTAA
GAAGAGCAGCAGCCTGATTGCTGGTTTACAGGTTGCCCTCGGATCTGGACGGTTGCTGGCTTGGATCCTCCTGAAGGATTACTCGC
CATTCTTGTCTTGATTGCAGCAGTCATGGCCATGAAAGCTTCCTCGACATTGGTAGCGTTCTTGGCACTTGTCTCCAAGAACGGGA
TCCCAAGTTCATCTGCAAAAGCCTTGGCAGTTTCAGTGGATACAACTTTCTGTGAAGTGAGATCGTTTTTGTTGCCAACCAGTAGC
TTGTTCACATTCTCACTGGCGTAGCGGTCGATTTCGTTAAGCCATTGCTTGACATTGTTGAAGCTCTCTTGGTCTGTTACATCGTA
AGTCACAATGATCCCATGAGCTCCTCTGTAGTAACTGCTGGTGATCGTTCTGAAACGCTCTTGACCTGCCGTGTCCCAAATCTGGA
GTTTGATGGTCTTTCCATCTTGTTCGACAGTGCGGATTTTAAAGTCAACACCAATGGTGCTGATGTAGCTATCCAGGTAGGAATCG
TCAGCAAACCTTAGAAGCAAACATGATTTGCCAACACCAGAATCACCAATTAGCAAAAGCTTGAACAGATAGTCATATTCAGGATT
CATGGGGGATCGAACTACCGGTAACAACAAAGAGGAGATTCCGCCGATCCTTCGTCGGTGAGAAGCGCGATTGAGAGACGTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABD65068 GTP-binding protein, putative [Brassica oleracea] | 1015 | 4e-108 |
| NP_568678 RAB GTPase-1A [Arabidopsis thaliana] | 1012 | 8e-108 |
| NP_193486 RAB GTPase homolog 1C [Arabidopsis thaliana] | 1006 | 4e-107 |
| ABD64935 GTP-binding protein, putative [Brassica oleracea] | 1006 | 4e-107 |
| AAL31108 AT4g17530/dl4800c [Arabidopsis thaliana] | 997 | 5e-106 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q05737 GTP-binding protein YPTM2 | 935 | 3e-100 |
| P28188 Ras-related protein RABD2A | 894 | 2e-095 |
| P40392 Ras-related protein RIC1 | 891 | 4e-095 |
| Q39571 GTP-binding protein YPTC1 | 835 | 1e-088 |
| P31584 GTP-binding protein yptV1 | 825 | 2e-087 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2A9H3 GTP-binding protein, putative | 1015 | 3e-108 |
| Q9FPJ4 AT5g47200 | 1012 | 6e-108 |
| Q2A9V7 GTP-binding protein, putative | 1006 | 3e-107 |
| Q9SEH3 AT4g17530/dl4800c | 1006 | 3e-107 |
| Q8W4S8 AT4g17530/dl4800c | 997 | 3e-106 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G47200.1 ATRAB1A; GTP binding | 1013 | 3e-110 |
| AT4G17530.1 ATRAB1C; GTP binding | 1007 | 1e-109 |
| AT1G02130.1 ARA-5 (ARABIDOPSIS RAS 5); GTP binding | 895 | 1e-096 |
| AT3G11730.1 ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding | 792 | 1e-084 |
| AT5G59840.1 Ras-related GTP-binding family protein | 613 | 6e-064 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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