Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN20024

FASTA Sequence
Unigene ID: UN20024Length: 1894  SNP
ACACAAGCCAAGGAGTAGATATTTTGATTTATTTTATTCATAACATCAATGATTATTCAACCAACAATGTCTAGAAACACAACTGA
TAATATCTCAAAGACCGAGCGAGAAAGGGAAACCGGTCGAGGATAACCAACCACCACCACCAATAAACTGACCAGCCGTATATGGC
TGAGCTTCAGCAGCAGAAGTAATAACCTTAAAGCCCTTCCACGTCACTCTATTTGAAGTTCCAGCCCCTGCTCCTGTATTCGCATA
CTCTCTATAAGTCAAAGTGTTCAACGCGAATGTCCCGCTCCACTCTGACCATCCTTCGGGTCGGATCACATCGGAGATATCCGACT
GCATTATCACCGTCTGCGAGTACTCTTTCCACGGGCGACCAAGATACGTTGGAAAACTACTTTTCACGGGCTGTAAATCCGACGTG
GCACCGATTCTACATTTTTGGATAACTATCCCAGTGTTTTGGTTAGGGTCTGTCCGTCCTTGGGCCGTGACCATGTTTTTCTGGCC
GGAGTTTGGCCGGCGAGCGTGGATGTCGCAGTCTTGCAGAACAACGGCGGCATTTCCGAAGATGAAGTCGACGGTTCCGGCAATGA
GGCATTTGACAAAGAACTGACGGTTGGAGTGAACGTAAAGAGTGTCTTGGTACGCTAGCATGTCGCATTGGTAAAAAGCGGAGAAG
TCGGAACCGACACGGAGAGCTACCGCTTGGTGCTTTGACGGACCCGCCGTATTCTGGAAAGTGATGTCACGCGCTAGGAATCTCTC
GCCGACAGCAGCAACGGTGGCGGAGTTAAAGGTAGTGCTACCGTCGACGACATTTCTACTTGCGGTAATAATAGTTTTTGTCCGAC
CATCTCCCATAAACATTATGTTCTTTTTCTTCTTGGCCACGTCCACATTCTCTCTATAAACTCCTGCTTTAATATGTATTACATAC
CTCTTATTACTATTCTCGGGGGCAGCAGCAACGGCAGCCGAGATAGTCGTGAATGTACCGCTACCATCAGCCGCCACGGTGGCATC
GGCTTTCACCGTAGACCCTTGAAGAAGTCTTCTGTCTCCCGCAGATAACCAAGTCGGCCACCCATCAGCACCTAATTCTCCGGCAC
CGGCAATATCTACGGCCACCGTAGTCTCCTCCTCCTTGAGTTTACGGTTGTTTGAGCTGAATTTAGCTTTCAGCTCGAAATTGGCT
ATGTCGGTATCAGTCATGTTCTTGATCATTGCTAGTGCGTTGCTGCACATGTGCTCTACGTGCATCTGGCCCTTTAACAAAGCCTT
ACGGACTTTCTTGTCGGCGTTGTCATGAGAGAAGCCGTCGAGACAAGTCTCCTGGTTGGTGATGGCAGAGCTAATTAGTGTTTTGA
GATCACCGGCGTGTTCCCGGAGAGATTTCTTGTTAGGATACATATGGAGATCTTCGAGCGCCTCGTGAAGCTCATCGAGGGTCTCA
TCTATAGTCTCCAAACAGTCAAGAAGCGCTGTCTTCTCGCGAGGAGTTAGTCCCTTCCTGTTCTTGATCAATTTCTTGACGCCGAA
GTAATTGTGTTCCACGGCGATTGTTGTTAGGTTGAGCGAAGCCTCGATGGCGTCTTTCTGCGACGTAAGTTTGACACCGCCGGAGG
TGGCCACGGCCGAGATGCATAGCTCAGGGTAAAGCGTGGAGCTGCATGCGGATCTTAGCACGGCGTGAGAAGATGGTGATAGAGTT
CGTTTTCCGTTGGCTTTTGAAGCTCCGGCGGAGATTCCGGCGACGGCAGCCACGAGGAGCAAGGCTACGGCAGCAGATAGTAAAAC
AAGTTTCTTATTTTTCTTGAAATTATCTTTGGAGAAGATTTGTTTGATAGATGGTGCCATTGTTTTGACACTGATGAGTGAGTGGT
CC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_188048 pectinesterase 3 [Arabidopsis thaliana]27812e-312
AAC72288 putative pectin methylesterase [Arabidopsis thaliana]27651e-310
XP_002885033 ATPME3 [Arabidopsis lyrata subsp. lyrata]27419e-308
NP_175786 pectinesterase 2 [Arabidopsis thaliana]23977e-268
XP_002891774 ATPME2 [Arabidopsis lyrata subsp. lyrata]23842e-266

Swiss-Prot top hits (Blast detail)Scoree value
O49006 Pectinesterase/pectinesterase inhibitor 327819e-314
Q42534 Pectinesterase 223973e-269
O04886 Pectinesterase 114295e-157
P83948 Pectinesterase 314242e-156
Q43143 Pectinesterase/pectinesterase inhibitor U114053e-154

TrEMBL top hits (Blast detail)Scoree value
Q56W36 Pectinesterase18365e-203
Q9SEE6 Pectinesterase14584e-159
Q9LEB0 Pectinesterase14485e-158
B9GXZ8 Pectinesterase14469e-158
Q84V57 Pectinesterase14423e-157

Arabidopsis top hits (Blast detail)Scoree value
AT3G14310.1 ATPME3; pectinesterase27825e-315
AT1G53830.1 ATPME2; pectinesterase24026e-271
AT1G11580.1 PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase10603e-115
AT5G53370.1 PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F); pectinesterase10111e-109
AT3G43270.1 pectinesterase family protein9832e-106

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
67  35%
 
89  45%
 
92  10%
 
122  10%

Unigene MembersMember information