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Information for unigene UN20025
| FASTA Sequence |
| Unigene ID: UN20025 | Length: 621 |
| SNP | GGATAAACTGCAACCATACAGATAGATTAGGGAGAGAGCAGTGAGCAATCGCAGGGAGAAAATGGAGGAAGCAAAGGGACCTGTGA
AGCACGTTCTGCTTGCTAAGTTCAAAGATGACGTCACCCCAGAGAAGATCGATGAACTTATCAAAGGTTACGCTAATCTCGTCAAT
CTCATCGAACCTATGAAAGCTTTCCACTGGGGAAAAGATGTGAGCATAGAGAATCTGCATCAAGGTTTCACACACATCTTTGAATC
CACGTTTGAGAGCAAAGAAGCTGTAGCTGAGTACGTTGCTCATCCTATTCACGTTGAGTTCGCCACCATGTTCCTAGGCAGCTTGG
ATAAAGTGTTGGTCATAGACTACAAGCCTACCTCTGTTTAAATTCGTCTTCTTTGTGTGATCTTTGTTTGTAATAAAGTATGTTCC
TTTTGATGTATTTGCCATTGGTTAATTTGTCTGCCTTCTTACAATGTTTCTGTCAATCTCTTTATTTTTCTTTGTATCAGACAATG
TGTGTTAAAAGATCATTAGTGTTTTGCTTGTTTTCTTTTATGGTTTGAGTACTTTGTCGTCACTTAATCTCTTGTATTTTTTTTTT
TTATCAATAATGGTAATAG
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_566569 putative protein Pop3 [Arabidopsis thaliana] | 523 | 2e-051 |
| 1Q53 Chain A, Solution Structure Of Hypothetical Arabidopsis Thaliana Protein At3g17210. Center For Eukaryotic Structural Genomics Target 13081 | 523 | 2e-051 |
| AAM63750 pop3 peptide [Arabidopsis thaliana] | 519 | 6e-051 |
| 1Q4R Chain A, Gene Product Of At3g17210 From Arabidopsis Thaliana | 512 | 4e-050 |
| XP_002883054 hypothetical protein ARALYDRAFT_479193 [Arabidopsis lyrata subsp. lyrata] | 485 | 6e-047 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LUV2 Probable protein Pop3 | 523 | 1e-052 |
| Q9FK81 Uncharacterized protein At5g22580 | 238 | 1e-019 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q0WKU8 Putative uncharacterized protein At3g17210 | 523 | 2e-051 |
| C6SXE9 Putative uncharacterized protein | 473 | 1e-045 |
| C6TFR4 Putative uncharacterized protein | 454 | 2e-043 |
| B9R7J0 Putative uncharacterized protein | 447 | 1e-042 |
| B9HMS2 Predicted protein | 435 | 2e-041 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G17210.1 HS1 (HEAT STABLE PROTEIN 1) | 523 | 1e-053 |
| AT5G22580.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Stress responsive alpha-beta barrel (InterPro:IPR013097), Dimeric alpha-beta barrel (InterPro:IPR011008); BEST Arabidopsis thaliana protein match is: HS1 (HEAT STABLE PROTEIN 1) (TAIR:AT3G17210.1); Has 231 Blast hits to 231 proteins in 57 species: Archae - 0; Bacteria - 89; Metazoa - 0; Fungi - 4; Plants - 98; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). | 238 | 1e-020 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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