RadishBase

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Information for unigene UN20028

FASTA Sequence

Unigene ID: UN20028	Length: 759	SSR
GGAAGATCCGAGGCGTCTTCCCTTCTCCGTCATCAGATTCTCTCACCCTACCCGACGCTTCTTCTTCTTCTTCTTCTTCTTCAGAT TCTCTCTTTTATTAGGGTTACCAATTATCAGCGATCAAAAATCGATGGCCTCTCTCGATTCAGACGTGAACATGGTTCCCGCAGGA GAACCCTCAGCCCCTTCGTCTTCGTCTGCGAAGAAGGCGAAGAGATTCGAAGTGAAGAAGTGGAGCGCCGTGGCTCTCTGGGCTTG GGATATCGTTGTTGATAATTGCGCCATCTGCAGAAACCACATCATGGATCTCTGCATTGAATGTCAGGCTAATCAGGCTAGTGCGA CGAGTGAGGAATGCACTGTTGCTTGGGGGGTTTGCAACCACGCCTTCCACTTTCACTGCATCAGCAGATGGCTAAAGACTCGTCAA GTTTGTCCATTAGATAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAAACCATCTAATCGTACCAGCAAATATGTGTCTAATC AAAGATATCAGGGTCATTTGGTTGCCGCATATGATGCTGATATCGCTCAAAGTTCTTTTGTTTTTTTTTTTTTTAATTTGGTTTGT CGCAAGTTGTCAAAACAGAGATGTTACTCTTCACTGAACCTATTATGTTTTGCTTTGGGCGATGTCTTTAATTTCAAGAAAATATA TAGTTACTGCGGAGAAACTTTTAGTAGTAAATCCTCTCTGAGTTGGGCAATATTAAAAAATCCTATTTTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ABC41134 RING-box protein [Arachis hypogaea]	601	3e-060
XP_002278332 PREDICTED: hypothetical protein [Vitis vinifera]	597	9e-060
NP_568396 RING-box protein 1 [Arabidopsis thaliana]	595	2e-059
ACU14739 unknown [Glycine max]	595	2e-059
ACU15939 unknown [Glycine max]	595	2e-059

Swiss-Prot top hits (Blast detail)	Score	e value
Q940X7 RING-box protein 1a	595	7e-061
Q9M2B0 RING-box protein 1b	537	4e-054
Q9W5E1 RING-box protein 1A	524	1e-052
Q8QG64 RING-box protein 1	522	2e-052
P62877 RING-box protein 1	517	8e-052

TrEMBL top hits (Blast detail)	Score	e value
Q2PYP4 RING-box protein	601	2e-060
A5ARK4 Putative uncharacterized protein	597	6e-060
C6SZR6 Putative uncharacterized protein	595	1e-059
C6T2R2 Putative uncharacterized protein	595	1e-059
D6BRE8 Putative ring-box Roc1/Rbx1/Hrt1 protein	595	1e-059

Arabidopsis top hits (Blast detail)	Score	e value
AT5G20570.1 RBX1 (RING-BOX 1); protein binding	596	5e-062
AT3G42830.1 ring-box protein Roc1/Rbx1/Hrt1, putative	538	3e-055
AT5G20570.3 RBX1 (RING-BOX 1); protein binding	420	1e-041
AT5G20570.2 RBX1 (RING-BOX 1); protein binding	375	2e-036
AT3G05870.1 APC11; protein binding / ubiquitin-protein ligase/ zinc ion binding	128	9e-008

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	5			50%


6	2			20%


7	2			20%


9	1			10%

Unigene Members	Member information