RadishBase

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Information for unigene UN20029

FASTA Sequence

Unigene ID:UN20029

Length: 1191

GGATTCTCCTCTCTATTATTCTCTAAATCAGAAAAGGTTTCCAAGGAAGAGAGAAACGTAGAGAGAAATGTCGGTGACATCCACGG
TGGAGGAGAACCACCGTAAAAAGCCTTATTCGTCGGAGAAAGAGGCGGAGAAGAGGAGACAGAGATGGGTGTTTTGGGGGAGAAAG
TGGAGGAGATTAGATTACGTCAAACTAACAGCTTCACTGTTTGTGCATTCAATGGCTCTCTTGGCGCCGTTTTATTTCAGCTGGTC
GGCTCTTTGGGTAACGTTTTTGTTCTATACGATTGGTGGTCTTGGTATTACGGTGTCGTATCACCGGAACTTGGCTCACCGGAGTT
TCAAAGTCCCTAAATGGCTTGAGTATCTCTTAGCCTATTGTGCCCTTCTCGCCATTCAGGGAGATCCGATCGATTGGGTGAGTACT
CATCGATATCATCACCAGTTTACAGATTCAGAAAGAGATCCACATAGTCCTAAAGAAGGCTTTTGGTTTAGTCATCTTCTATGGAT
TTATGATTCTGCATATCTTGTTTCAAAGTGTGGAAGAAGAACAAACGTGGAGGATTTGAAGAAGCAATGGTTCTATAGGTTCCTTC
AAAAAACGGTGATGTTTCATATTCTAGGACTTGGTCTCATTCTCTACTATCTTGGTGGCATGTCCTTCGTTACTTGGGGAATGGGT
GTAGGAGCAGCATTGGAGGTGCACGTGACTTGCTTCATCAACTCCATCTGCCACATTTGGGGCACTCGGACATGGAAAACCAATGA
CACTTCTCGTAATGTTTGGTGGCTATCTGTGTTTTCATTTGGAGAAAGTTGGCACAACAATCACCATGCGTTCGAGTCGTCGGCGA
GGCAAGGACTTGAATGGTGGCAAATAGACATCTCTTGGTACATTGTTCGGTCACTTGAGATTGTTGGGTTAGCATATGATGTGAAA
CTCCCGACGGAATCTCAAAGACGTAGGATGGCTATTGTCCGTTGAAGAAAAGAAGGATTTATTCTATGTAAAATTAGAATATCTAG
TCCTAGAAAAGAGTTTATTGTTTTACTTTTGAAGTTTTGGGTAAATGCAATGTGAACGTTTTCGATGTATTGATGTTGGACTAAAT
TTATTTAAGATATTTGTGGTAATTGGTGCTTATAAATCCTTAGTGGGTGGCAATTAATTCGTTAATGACGGTC

Annotation(GO term)

GenBank top hits (Blast detail)	Score	E value
NP_565721 delta-9 acyl-lipid desaturase 2 [Arabidopsis thaliana]	1545	2e-169
AAM63359 delta 9 desaturase [Arabidopsis thaliana]	1534	4e-168
XP_002881171 hypothetical protein ARALYDRAFT_482064 [Arabidopsis lyrata subsp. lyrata]	1530	1e-167
XP_002889584 hypothetical protein ARALYDRAFT_887802 [Arabidopsis lyrata subsp. lyrata]	1340	1e-145
NP_172098 delta-9 acyl-lipid desaturase 1 [Arabidopsis thaliana]	1328	3e-144

Swiss-Prot top hits (Blast detail)	Score	E value
Q9SID2 Delta-9 acyl-lipid desaturase 2	1545	1e-170
O65797 Delta-9 acyl-lipid desaturase 1	1328	1e-145
Q9LMI3 Delta-9 desaturase-like 5 protein	1008	2e-108
Q9LMI4 Delta-9 desaturase-like 4 protein	1006	3e-108
Q9FPD5 Delta-9 desaturase-like 3 protein	1000	2e-107

TrEMBL top hits (Blast detail)	Score	E value
D3YLK2 Delta-9 fatty acid desaturase	1010	2e-107
B9I0S1 Predicted protein	997	5e-106
B9RV72 Delta 9 desaturase, putative	990	3e-105
B4X949 Delta-9 fatty acid desaturase	941	2e-099
Q9FV68 Delta5 acyl-CoA desaturase (Fragment)	895	4e-094

Arabidopsis top hits (Blast detail)	Score	E value
AT2G31360.1 ADS2 (16:0Delta9 Arabidopsis desaturase 2); oxidoreductase	1546	7e-172
AT1G06080.1 ADS1 (DELTA 9 DESATURASE 1); oxidoreductase	1329	9e-147
AT1G06360.1 fatty acid desaturase family protein	1009	1e-109
AT1G06350.1 fatty acid desaturase family protein	1007	2e-109
AT1G06120.1 fatty acid desaturase family protein	1001	1e-108

EST library breakdown for ESTs in the assembly


6	4			13%


11	2			7%


12	3			10%


7	8			27%


10	6			20%


9	7			23%

Unigene Members