RadishBase

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Information for unigene UN20037

FASTA Sequence

Unigene ID: UN20037	Length: 951		SNP
GGGCGAGTTGAGACGCGCAACTGTATTTTACTCAATGCTCATGCAACTATACTAGTGATCTACAAATTGCCGCGTGCATATACAAT ATATAGTACAAGTTTTATATATCCTGCCAAATCCTCGGTTCCAAATCATTTTATGTTATATATAATTATACATTTACAATTTTTTT GTTTCTGTCTTTATTCTCACAATTAGATTACAAAACGGGGAATAACCAAAACAGAGGGCAGCTTATAAGAGAACTGGATATCCCTC TTGGAAGGAGAGAAAAGAGATGGTGAGGTTGAGAGAAACAGAAGTGATCCTGAGACTCTGTATCGTCTTTCTTCTTATACTCACTT CTATTCTGATTGGTTTGGATTCTCAGACCAAAGATATTGCTTATATCCACAAGAAAGTCACTTTCAGATACTTGTTTGCTCTGGAG GTTGAGTTGTACATAAATGCTGTGGTTGCTGCATATAATATCGTTCAGTTAGGATTTGGTTGGTACGGTGTTGCACAAAAAAACTC CAATTCTAAATGGCTCTCTTACCTCTTGGATCAGACGGCGGTGTACGTGGTGTTCGCCGGGGCATCTGCGGCGGCACAACACTCAT TGCTTGTGGTGACTGGTTCGAAGGAGCTTCAGTGGATGAAGTGGTGCTACAAGTTCACAAGGTTCTGCTTTCAGATCGGAAGTGCC ATTATCTTAAACTACATCGCAGCGGTGCTCATGATCATCCTCTCCTTCATCTCCTCCTTCAGTCTCTTCCGCCTCTATTCCCCTAA ACGTTATTTTCAGTTTAAGTCCTCCTCTTAATTATTTACTAGGTTAAATCCTTTTCTTGATCTAAAATAATGTTGATTAATGCGAA GAATATGATTATTGTTCGTCTCTAAATTATAATTCTGTATCTTTAAGTAAATGCAAAATTTTCTTACATAAATATCGTTAGTCCAT TGCCG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002869651 predicted protein [Arabidopsis lyrata subsp. lyrata]	764	6e-079
NP_567729 uncharacterized protein [Arabidopsis thaliana]	760	2e-078
CAB39604 putative mitochondrial protein [Arabidopsis thaliana]	723	3e-074
B9IM09 RecName: Full=CASP-like protein POPTRDRAFT_578614	430	3e-040
Q5K4H9 RecName: Full=CASP-like protein XL3	416	1e-038

Swiss-Prot top hits (Blast detail)	Score	e value
Q8L8U9 UPF0497 membrane protein At4g25830	760	7e-080
Q5K4H9 UPF0497 membrane protein xl3	416	6e-040
A7Q6G6 UPF0497 membrane protein 13	404	1e-038
C6SZ04 UPF0497 membrane protein 8	327	1e-029
B8LQF9 UPF0497 membrane protein 5	267	1e-022

TrEMBL top hits (Blast detail)	Score	e value
B9T767 Putative uncharacterized protein	293	2e-024
B9IM09 Predicted protein	290	4e-024
B9HD38 Predicted protein	259	1e-020
A5C3N9 Putative uncharacterized protein	250	2e-019
B8B0Y5 Putative uncharacterized protein	244	8e-019

Arabidopsis top hits (Blast detail)	Score	e value
AT4G25830.1 integral membrane family protein	761	5e-081
AT2G35760.1 integral membrane family protein	259	8e-023
AT4G16442.1 integral membrane family protein	202	3e-016
AT2G36100.1 integral membrane family protein	126	2e-007
AT3G14380.1 integral membrane family protein	123	5e-007

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	2			15%


11	4			31%


7	3			23%


8	2			15%


6	2			15%

Unigene Members	Member information