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Information for unigene UN20045

FASTA Sequence
Unigene ID: UN20045Length: 1558  SNP
GGGAGCTAGCTTTCGAGTGAAACTTGAAGAAAAACAGATTCGTCATTTCTTACTGTTCGGTCTGAAAGCTACCTACCTTCCTGTTC
CCTGGAGATGTCTGTCTTTGATGATGATTCGTTCGTTATACTCGGAGATGATGCATCTGAGTCTGTTCCTCAGGTCTCAGCCCAAG
TAGATGATTCGATCAATGATGACGTTTTCGCGGCGCCGTCTTCAGACTACGGCGGTTACTCTAACGGAGACGACGGTCCTATCTTG
CCTCCTCCTTCGGAGATGGAGTCTGATGAGGGAGCTGCTCTCAGAGAATGGAGAAGACAGAATGCGATTCAACTTGAGGAGAAGGA
GAAGAGAGAAAAGGAGTTGCGGAACCAAATAATCGAGGAAGCTGATCAGTTCAAAGAGGAGTTCCATAAGAAGAGGGAGTTGGCTT
GTGAAAACAACAAAGCAGCGAACAGGGAGAAACAAAAGCTGTATGTGGAGACCCAAGAGAAGTTTTACGCGGAAGCAAGCAAGAAC
TACTGGAAGGCAATAGCAGAGCTAGTGCCTAAAGAGGTTCCAATTATAGAGAAAACAAGAAGAGGGAAGAAGAAAGAGGAAGATCC
CAAGAAGCCTACTACAATCTCTGTGATTCAAGGACCAAAGCCTGGTAAGCCAACCGATCTCTCGAGAATGAGACAGATATTGCTGA
AGCTCAAACAGAACCCGCCTGCTCACCTCAAACTCACTCCTCAACCTCCTCCATCTGAGGCTGCTCCTCCAGAGAATGTTCCTCAA
ACCAAGCCCGCCGAGGCTGTTGCTGCTTCTTAGGAAGCCATCTTCGCTTTTGTTATTCGTTTCTTATGTGTTTGTTATATATACAG
CTGAGATATTGTAAGGGGCACATGTGTGTTATATTATTAACTGTTATGTTATGTTCGATGATACTTGATAACTCAAATCAGAAATC
ATTAAAAAAAGTGGTTAAATTATCTCAAACAATCAGATAACAACAAGAAATACCATAGAGGCGACTTCAGGTTAGACAGATATCAT
CATCAATCTCGTGTGAAAGACACTCTGCAATAATAATTGAGAGAAGAGGATCTCAAAAGTCAACGGTTTACAGATTTCTTCTTCAC
TCTTTTCATCCTATCTCCCTTGTAAGCTGCTTGCAGGGGACCTGCAACCTCTCCCGCTGCCTGCGTCATCTTCCTTTTCGCTAGCT
GCCTCTAAGCACATGCCATTGTTGTTGTAGACACTGATCTCTGAGCTCGCGTTGCTGCTTGTCGCCAGTGGAGAATCTGATACATT
CATTGGTCTGCCACGAGTATGTCCAGATCTCACACTGTACATTGATGATGCTGGAATGTTTGTCATTAGTGGTCTCAGATTCCCTG
GTATGGTCCTACGTATATCCATATGTCTTATAGCCATATCAGGGGACTTCTTGGAGAGATTTCTTCCAAACCCTGCACTGTCTGGT
GATGAGGACTTTGCAGACAAATTACCATGAGGAGAACCCTTTTCATCTGATCTGGGAGGAGCCAGTTTCCGCATGTTTATCACTCT
CTCCACCATC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_565921 Clathrin light chain protein [Arabidopsis thaliana]8232e-085
AAM65809 unknown [Arabidopsis thaliana]8222e-085
XP_002879840 hypothetical protein ARALYDRAFT_483043 [Arabidopsis lyrata subsp. lyrata]7935e-082
NP_181536 uncharacterized protein [Arabidopsis thaliana]6441e-064
NP_001078028 uncharacterized protein [Arabidopsis thaliana]6441e-064

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
O04209 Expressed protein8231e-085
Q8L9R8 Putative uncharacterized protein8222e-085
A8MRI7 Uncharacterized protein At2g40070.26447e-065
C0Z3I5 AT2G40070 protein6447e-065
Q494P4 At2g400706447e-065

Arabidopsis top hits (Blast detail)Scoree value
AT2G40060.1 protein binding / structural molecule8962e-096
AT2G40070.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 94255 Blast hits to 49644 proteins in 1573 species: Archae - 225; Bacteria - 11215; Metazoa - 37735; Fungi - 21320; Plants - 3339; Viruses - 2662; Other Eukaryotes - 17759 (source: NCBI BLink).6453e-067
AT2G40070.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 92805 Blast hits to 48882 proteins in 1559 species: Archae - 225; Bacteria - 11081; Metazoa - 37135; Fungi - 20962; Plants - 3300; Viruses - 2664; Other Eukaryotes - 17438 (source: NCBI BLink).6453e-067
AT2G20760.1 protein binding / structural molecule5566e-057
AT3G51890.1 protein binding / structural molecule5522e-056

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
116  55%
 
102  18%
 
122  18%
 
211  9%

Unigene MembersMember information