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Information for unigene UN20054

FASTA Sequence
Unigene ID: UN20054Length: 895 SSR 
GCTGAGAGTAAAAGTTTCAACTTTACAGAAGTTATTATAATTACAAATCATAGTTTTTGATTTTTAAATAATAAATCACATTTACA
TAGATAATAATCGTTCATCCCCAAATTTATTAAAACAATTTACAAAAGCAAAAGGAAATACAATGATTTGGGGGAATAAATCAAAG
AGATCAGTTAAGTCATCATTTCTTCAACCAAACACCATCCTTCATCAAATACTTCCACATGATCAACCATCATCATCACCCCCACA
TCACAAAAACTCATCCTTCCATCATCATCATCATCATCATCATCAACATCATCATCAAGAGACCCATCTTCTTCCTTTTCACCATC
ACCACCACTCTGTATATTCACTATTTCCTCTACAACACATCCTGTGTATTCTTCTTCCTCCTCTTCTTCTTCTTCTTCTTCATCAG
ATTCATAATCATGATCATAACCATAATCATCAGACATAAGATCAAGAAGTCCAGTAGCCGAGAACCCGGAAAGCTTCAAGCCGGGT
CTGTGCCCACCAGAAGCAACCTGCCAAGTCAGCATCTTGTAAGTGATATCATTTGATCTCACCTTAGAAGAGCCTTTACTTTTGAC
TTTGGACTTGGTGATGGGATGCATATGGCACTCAAGGCACCTTGCCTGGCCACATTTTCCGGTGAACTTGGAGTGATTGGTCGGCT
TAGATGACACTTTGGTGAATAGCCCGGCGGTTGGACGACAGGTCAAAGGATTGACCAACTTGGCTTGCGGTCTTGGATTCAGCGAC
GGAGGCAGGATCCTGTAGGTTCTAACCATACCGTGTTGCTTGCCTTCACGCTTCATCTCAGGAGGTTATTGATGAGACCTTTTACT
ACACAGAAGAAGAAGAAGAATGGAAGATGTGAACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002870685 hypothetical protein ARALYDRAFT_493913 [Arabidopsis lyrata subsp. lyrata]9699e-103
NP_198885 uncharacterized protein [Arabidopsis thaliana]9412e-099
AAM61260 unknown [Arabidopsis thaliana]9303e-098
BAF00498 hypothetical protein [Arabidopsis thaliana]9269e-098
XP_002268221 PREDICTED: hypothetical protein [Vitis vinifera]4617e-044

Swiss-Prot top hits (Blast detail)Scoree value
Q8MP30 Uncharacterized histidine-rich protein DDB_G02745571683e-011
P04929 Histidine-rich glycoprotein1495e-009

TrEMBL top hits (Blast detail)Scoree value
Q9FM29 At5g406909411e-099
Q8LFQ8 Putative uncharacterized protein9302e-098
Q0WQV1 Putative uncharacterized protein At5g406909266e-098
C0Z2P6 AT5G40690 protein4241e-039
B9SLR9 Putative uncharacterized protein4132e-038

Arabidopsis top hits (Blast detail)Scoree value
AT5G40690.1 INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 208 Blast hits to 177 proteins in 46 species: Archae - 0; Bacteria - 4; Metazoa - 51; Fungi - 25; Plants - 42; Viruses - 6; Other Eukaryotes - 80 (source: NCBI BLink).9425e-102
AT2G41730.1 unknown protein1665e-012
AT3G10810.1 zinc finger (C3HC4-type RING finger) family protein1532e-010
AT5G24640.1 unknown protein1442e-009
AT4G26600.1 nucleolar protein, putative1182e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
105  45%
 
121  9%
 
114  36%
 
81  9%

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