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Information for unigene UN20056
| FASTA Sequence |
| Unigene ID: UN20056 | Length: 902 |
SSR | | GGAGAAAGAGAGAGAAAGAAGAAAAGTCTCTCTTTTTTTTTTCTTCGTCTCCCAGATTCTCTCCTCCTCCTGCGAGATCAAATCTT
CTTTCTCTCTCACCTTCCTTGGTTTTCTCGGCGGCTCCATCTCTTTTTTTTCTTCTTTTCTCAGAATCGTTTGTTTCCATTTTTCT
TGGGATAAATCTTTCTCCCTTCTGCAGAGGCCATGTCGGACAAAGGTCGTCCCTTGCCGAAGTTTGGTGAATGGGATGTGAATGAT
CCAGCATCTGCTGAAGGTTTCACAGTGATATTCAACAAAGCTAGGGATGAGAAAAAGACTGGTGGCAAACCCGGATCGCCCGGTAA
ATCTACTGATGGTCATGCTAAGTCCGGAGGAGGAGGAGGAGATCCTAGTAAACCTCAGCCTAAAAAGTGGCTCTGCTGCATGCAGT
CTCCGGCTGTGGACTCTTGATTGACACTAAAAGATGGATTTGTTTGCTGCGCAAAGAAAAAAAGAGAGAGTCACATTGCTTAGACA
TCTAAAAGCAATGTTCCCTTCTTTTTTTATGTTTTATTGTCTTTCTTGAAGTACCGACGACAACAAAAGGTTACTAAGATAAGTTG
GAGCCACCCCCCTTTAGTATCACGATTATGATTCCTTCTTTGAAGTTGTTTCTTCTTCTATGAAAAAAATGTTGTAAAATCGTGTT
GTCACTTTTATTGGAAAAGAAAAAGAAAACATAGTAGTTATTGTGTATTTAACTCATGGGTCGTTTTTGGGTTTAGCTTTATGGTG
TTTTTTTTTCCTTTATTTTAAATTATATTCTGTTCTTCGACCCAAAAAAAGTTATAATGTATACTGTGTATGGATGTTGATCCTTG
TGTTTTACCTTTTACTCATCAGACAAGTTATTATTACGTGTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAB86938 NOI protein [Arabidopsis thaliana] | 408 | 1e-037 |
| NP_001190552 RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana] | 399 | 1e-036 |
| NP_200396 RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana] | 347 | 1e-030 |
| XP_002864413 hypothetical protein ARALYDRAFT_495666 [Arabidopsis lyrata subsp. lyrata] | 341 | 6e-030 |
| NP_001154782 RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana] | 338 | 1e-029 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O22633 NOI protein | 408 | 7e-038 |
| B9GFY3 Predicted protein (Fragment) | 332 | 5e-029 |
| B9I1B3 Predicted protein | 326 | 2e-028 |
| C6SWS8 Putative uncharacterized protein | 311 | 1e-026 |
| C6SWK6 Putative uncharacterized protein | 301 | 2e-025 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G55850.1 NOI | 347 | 5e-033 |
| AT5G55850.2 NOI | 338 | 5e-032 |
| AT2G04410.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Defence response, Rin4 (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: NOI (TAIR:AT5G55850.1); Has 141 Blast hits to 140 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | 262 | 3e-023 |
| AT5G63270.1 nitrate-responsive NOI protein, putative | 180 | 1e-013 |
| AT5G40645.1 nitrate-responsive NOI protein, putative | 170 | 2e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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