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Information for unigene UN20060
| FASTA Sequence |
| Unigene ID: UN20060 | Length: 872 |
SSR | SNP | CAAAACTACGACTTCTTATTAAAGAGGGTCAGAGAGGCGAATCAGCTTCTTTGCAAGAAAGTAAAAATAAATATCCAACTTAGTAG
ACACATCATAACAGTCTGAGACCAAAAAAGAAAAAAACAAATCTACAAACAAACTCAGCAATGAATTAAGACTAGGGAGCAGGAGA
AACGTGTGGAGAACCAGAGAGGATGGTCTCTTCTTCAAGCTTGAATTTTCCTTTAATTTGCTTGGATTTGGTGCTCTTGTCCGAAA
CATCATCACAAGGTGTAGAAACGGGAGATACACCCTTAGCAGCAACAGGAGGAGAGGCAACCTTGGGATCAGGAGGAAAGGTGTCC
TCCATCACCTTGGGGACAGTGAAAGAGAAGTCTTCAAGAGGCGCACCCTTGAATTCAGGATTGGCTTCAACGTAGGAAGCGACCTC
ATTGCGGCTCCTAAGCTTTTTACCGGTGGGAGTGAAGTAGTAAGTATCCATCTTAGAGTAGTCTTTTCTGAGGACAAGGCTCCTCT
TGAAACCTTTGGGAGTTTTGGGAAGACCAGGCTTGTCGATGACCCAGGTACGAGAGGAGTCATAGTCGAGATCCGCAGGGTCTTCA
CAGGAGACTTGTTTCTTCTTGTCGCAGGTAAAAGGGTCGTCGATCATACGACTTCTGATATCCTCGTACTCCTCCTGGCTATCAAT
GACCCTCCACTGGTGACAGTTTTCGCATTGTGCCGCATAGGTATCTATCAACCTCCCTGCAGCAACGTCTTTCTTGGCTCTTGGTT
TCGCTACGCTCCCGTTCTCTTCCTCCGCCATAGCTCTGATTTGCTTCTTCTTCTTCTTCACTTAAGAAAATATATGATTTTTTTTT
GTTAATATATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_191862 methyl-CPG-binding domain 4 protein [Arabidopsis thaliana] | 766 | 3e-079 |
| XP_002876703 methyl-CpG-binding domain 4 [Arabidopsis lyrata subsp. lyrata] | 749 | 3e-077 |
| XP_002524794 DNA binding protein, putative [Ricinus communis] | 576 | 3e-057 |
| XP_002867754 hypothetical protein ARALYDRAFT_914336 [Arabidopsis lyrata subsp. lyrata] | 560 | 2e-055 |
| NP_567667 methyl-CPG-binding domain 1 [Arabidopsis thaliana] | 555 | 9e-055 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LYB9 At3g63030 | 766 | 2e-079 |
| B9SFM5 DNA binding protein, putative | 576 | 2e-057 |
| A9PE20 Methyl binding domain protein | 555 | 6e-055 |
| B9N926 Methyl binding domain protein | 555 | 6e-055 |
| O49655 Predicted protein | 555 | 6e-055 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G63030.1 MBD4; DNA binding / DNA demethylase/ methyl-CpG binding | 766 | 1e-081 |
| AT4G22745.1 MBD1; DNA binding / DNA demethylase/ methyl-CpG binding | 555 | 4e-057 |
| AT5G35330.1 MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02); DNA binding / DNA demethylase | 297 | 3e-027 |
| AT5G35330.2 MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02); DNA binding / DNA demethylase | 297 | 3e-027 |
| AT4G00416.1 MBD3; DNA binding / methyl-CpG binding | 274 | 1e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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