Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN20064

FASTA Sequence
Unigene ID: UN20064Length: 942 SSR 
GTGATAATTAAAGAATGAAACGTTTATTATTTGTCTTGTGTAGTAAAAGGCAAAAGAGTGTGTAATGACGAATATGATTTTACAGC
CATTTCACAATTATTTGTCTTAAGAACTATTGGTTATACATTACCACTATAAGGTGTTCTATTCTGGCTGATTAGTAGTGGCTTCT
TCATCAATCTTGAGTTCCTCCATTAGCAGATGCTCAATGGTGTCGATGAATGCAGTAACTTTCTCCAAGCTCTTCTCATCAAGTCT
TGGGACCGTATGGCCTTTAGGATGATTAACTACCACCGGATTCTTGAAGGAATCTATCAGCTCAGTTCCGTAAGGTTTCAAGAAAT
CAGTCTCTCCTAGAAAGTGGAGGGAGGGAGTATCCATGGTAGATGAATACGCATCCTTGGCGACCTTGGTGGATTTGAACATAGCT
CCTCCAATAATGATGATGAACTTGATCTTTGGTACTTTCTGGAGTGCAATTCCCCTAGCTTGCAGTCCTGGTAATCCTCCAGACAA
AATTGCACCCTGAGAAAAGCCAATGAGACCATCAAAAGGGCCAAGCTTGATCACACTATCCTCTATATACTCCAAACATTTCTCGA
AATTCGTATACTCATTAAATTCCTTGTTAAACTGGAACCACTCGTAATAAGGAGGATCGAAGATGCCTTCGACATCAGATTTGCCT
TGACAAGGAAAAGGCGCGTCGAGGAACACGAGATCGAGTCGGTCAATAACAGATTTAGGCCACTTGTGAAGCTGTATCTTCATTAT
CTCTCCGCTCGTACGGAATCCATGTAGACACAGAAACCTTGGCTTCCTCACAATCGTCGTCCCTTCGCTTCCCATTTCTTTTTCAA
TTAAAAAAATAAATAAATTCACAGTTTGTGTTTTGTTTGGTTTCTCTGTCTTCTCTTTATAAAGCTGTGTGTGTGTGTCTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_567701 uncharacterized protein [Arabidopsis thaliana]10721e-114
AAM63786 unknown [Arabidopsis thaliana]10674e-114
BAJ33821 unnamed protein product [Thellungiella halophila]10612e-113
CAB45073 putative protein [Arabidopsis thaliana]9483e-100
XP_002301079 predicted protein [Populus trichocarpa]8703e-091

Swiss-Prot top hits (Blast detail)Scoree value
Q9VDL1 UPF0483 protein CG54122231e-017
Q29BR3 UPF0483 protein GA188642061e-015
P36591 Dihydrofolate reductase1836e-013
A4II73 Ovarian cancer-associated gene 2 protein homolog1792e-012
Q3SZ07 Ovarian cancer-associated gene 2 protein homolog1622e-010

TrEMBL top hits (Blast detail)Scoree value
Q8GX45 At4g2438010728e-115
Q8LC87 Putative uncharacterized protein10673e-114
Q9STV6 Putative uncharacterized protein AT4g243809482e-100
A9PDU2 Predicted protein8702e-091
C6T2F6 Putative uncharacterized protein8201e-085

Arabidopsis top hits (Blast detail)Scoree value
AT4G24380.1 unknown protein10724e-117
AT4G24380.2 unknown protein7931e-084
AT5G65400.1 unknown protein6649e-070
AT1G09280.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Protein of unknown function DUF341 (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: rhodanese-like domain-containing protein (TAIR:AT2G40760.1); Has 4342 Blast hits to 4339 proteins in 940 species: Archae - 0; Bacteria - 1695; Metazoa - 138; Fungi - 282; Plants - 108; Viruses - 0; Other Eukaryotes - 2119 (source: NCBI BLink).1226e-007

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
113  33%
 
123  33%
 
91  11%
 
81  11%
 
61  11%

Unigene MembersMember information