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Information for unigene UN20082
| FASTA Sequence |
| Unigene ID: UN20082 | Length: 833 |
SSR | SNP | GGGACTTATCAGATCGTTGTTGACATAAGTAATTGGGCTCTCTCTCTCTCTCTCGCAAATCTTCAGACAGGTTTTGTCTCTTTGCG
ATCAGATCTCATCGAAGACGAGTGCGATGGCTTCAGGTTTCAGCGGAGATGAAACTGCTCCTTTCTTCGGATTCCTCGGCGCTGCC
GCCGCTCTCGTTTTCTCCTGCATGGGAGCAGCGTACGGGACGGCAAAGAGCGGGGTTGGCGTGGCGTCGATGGGTGTGATGAGACC
AGAGCTTGTGATGAAATCGATTGTTCCGGTGGTCATGGCTGGTGTGTTAGGTATTTACGGTCTCATCATAGCTGTCATCATCAGTA
CCGGAATCAACCCGAAGGCCAAGTCTTACTATCTCTTCGATGGCTATGCTCATCTCTCTTCCGGTCTCGCTTGTGGTCTCGCCGGT
CTCTCCGCCGGTATGGCTATCGGAATCGTCGGCGATGCCGGTGTCAGAGCGAATGCGCAACAACCAAAGCTGTTTGTGGGAATGAT
TCTGATTCTCATCTTTGCTGAAGCACTTGCGCTTTACGGTCTTATTGTTGGTATCATCCTTTCTTCTCGTGCTGGTCAGTCTAGAG
CCGAGTGAACCAACCCCAGAAAATCTCTTTTCTCATGTGCTAAATTCCCTGTAATGTTTTTGATATATTTTCACTTCCAATATTCC
TGGCATTGCGAGTTTCTCATGTAAAAACAAGCTAAATCACTTGATTTTGGTTCTAAATGTTATTTTTTTCTTTAATTAGCACAATT
TATGGGACATCAATAAGTAATAATAGGATGCTGATTCGGTGATTTGACTCTTTCGACTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002513005 vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis] | 807 | 5e-084 |
| XP_002513751 vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis] | 807 | 5e-084 |
| XP_002890358 vacuolar-H+-pumping ATPase 16 kDa proteolipid subunit 2 [Arabidopsis lyrata subsp. lyrata] | 804 | 1e-083 |
| NP_564098 ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana] | 802 | 2e-083 |
| NP_177693 V-type proton ATPase proteolipid subunit c4 [Arabidopsis thaliana] | 802 | 2e-083 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P59228 V-type proton ATPase 16 kDa proteolipid subunit c2 | 802 | 8e-085 |
| P59229 V-type proton ATPase 16 kDa proteolipid subunit c4 | 802 | 8e-085 |
| Q43434 V-type proton ATPase 16 kDa proteolipid subunit | 799 | 2e-084 |
| Q96473 V-type proton ATPase 16 kDa proteolipid subunit | 796 | 4e-084 |
| P59227 V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 | 793 | 9e-084 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RG53 Vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative | 807 | 3e-084 |
| B9RJ32 Vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative | 807 | 3e-084 |
| A9PAK2 Predicted protein | 802 | 1e-083 |
| Q24JM2 At1g19910 | 802 | 1e-083 |
| A9PHB1 Predicted protein | 799 | 3e-083 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G75630.1 AVA-P4; ATPase | 803 | 6e-086 |
| AT1G19910.1 AVA-P2; ATPase/ proton-transporting ATPase, rotational mechanism | 803 | 6e-086 |
| AT2G16510.1 vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) | 794 | 6e-085 |
| AT4G38920.1 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3); ATPase | 794 | 6e-085 |
| AT4G34720.1 AVA-P1; ATPase/ proton-transporting ATPase, rotational mechanism | 794 | 6e-085 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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