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Information for unigene UN20086

FASTA Sequence
Unigene ID: UN20086Length: 1681 SSR 
GGAAGCTTTTCAGTTGGTGTGTGCCCTGGATGGCTGTTCCTCTCTCAATCTCAACAAATCCTCCCATCTCCCGCCAATGTCACCGC
CCCTGCTTCCCTTCCACTTCATTTAAGGGAAATGTGAGCGTCTTAGGAGCAAACCCACGTCAGATTCTTTCTCTGAAACTCCACCA
CAAGCGTCGAACGGGACCCCTTGTTGTGTTCAACCAAACGTCGTCCTCTTCTTCGTCTCCAGCAGCATCAGAGAGGTTCCGTCTGG
ATAATTTGGGACCACAACCTGGTTCGAGGAAGAGGGCGAAGAGGAAAGGTAGAGGTATCTCTGCAGGACAAGGAGCGAGCTGTGGT
TTCGGGATGAGAGGTCAGAAGTCACGATCTGGTCCTGGAATCATGAGAGGTTTTGAAGGTGGTCAAACCGCTCTTTATCGCCGTCT
TCCCAAACTTCGAGGAATCGCCGGAGGTATGCGTGCAGGATTACCCAAGTACGTACCAGTTAATCTCAAAGACATTGAAACAGCTG
GGTTTGAAGATGGAGATGAAGTGTCACTTGAGACGTTGAAGCTTAAGGGTTTGATCAATCCTTCTGGAAGGGAAAGGAAACTCCCT
CTTAAGATTCTTGGTACTGGTGAACTAAGCGTGAAGCTCAACTTCAAAGCTCGTGCATTCTCAACATCAGCCAAAGAGAAGCTTGA
AGCTTCAGGCTGTACACTTACAGTGTTGCCCGGAAGGAAGAAATGGGTGAAGCCTTCAGTTGCAAAGAACCTTGCACGTGCCGATG
AATACTTTGCAAAGAAGAGAGCTGAAGCAGCAGCTTCTTTTTCAGAACCAGCTACTTCTGCTTAAACTTTTCATTTTCAAGCTTTT
CAATGTTGTAAAGATTTTGTAAAACGGTAAAAATTATTATTGAACATTTTGTTTCTAAATTAGAAAAAAAAGAAACTTTTTTCTCA
ATCTTCAACAAAATTTTACAGAATAGGTTTCATTATTACTACAAAGTTTCCACCATTTTCTTTGCATAAACACCAAAAGAGCCATC
AAGGTTCTTCATCATCATCATCAACATCATCAGCGATGAAAGCTCTTCTTCTGACACGACGTCTAGACTCTTGTTCATCAGAAGAC
TGATTGTTGTTCTCTTCATCTCTATCTCTAGATGACGTTCCCGTATCACCTTCATAGCTCTCTCCCCAAAGCCTTGAAGATCTTCT
TCTCACACCTATATGGGACCTAGCTCTAGACGTACCAGACCAGCTACTACTCCTTGATCCTCCACCACTCGATTCTGGTCTAAACA
CACGGATGAGGAAGAACACCGTAAGCCAACCACCATCATCAAACGATAGAATACCATCATCATTGCTGCTTCTCTCTTCTCCTCCG
AAAGAAGACTGTAGTGTGCTAAGCAAGTCCCCTAAATCCCTCTGCCTCTCTAGCCTCCTCCAGCTTCTCTGCCTCTCTGGATCAGC
TTCTGATGGCCTTACCCCTGGATGCTGGAGCCTCGCGTGCTTTCTCAGATCAGAGTAAGTTCCATTGAACTCACAACTCTCAGAAG
AACAGCTCCTAAGCTTCGCGTTCATGAAACCTCGAGCATCTTCAACAGCCACCCATTCTTTTATATGTCACGGCATAACGGACAAG
TAAGCTTCGGTTTGGTTTTTTTCTTGGTCTGTTACCTCATCAGATGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002876939 hypothetical protein ARALYDRAFT_484358 [Arabidopsis lyrata subsp. lyrata]11233e-120
NP_189221 50S ribosomal protein L15 [Arabidopsis thaliana]11162e-119
CAA77593 Plastid ribosomal protein CL15 [Arabidopsis thaliana]11082e-118
CAA77592 plastid ribosomal protein CL15 [Arabidopsis thaliana]10921e-116
XP_002279311 PREDICTED: hypothetical protein [Vitis vinifera]9253e-097

Swiss-Prot top hits (Blast detail)Scoree value
P25873 50S ribosomal protein L15, chloroplastic11168e-121
P31165 50S ribosomal protein L15, chloroplastic (Fragment)8506e-090
Q2JV94 50S ribosomal protein L152726e-023
P31160 50S ribosomal protein L152701e-022
Q5N0U8 50S ribosomal protein L152701e-022

TrEMBL top hits (Blast detail)Scoree value
B9T052 50S ribosomal protein L15, putative9082e-095
B9HJ33 Predicted protein8921e-093
C6SYC0 Putative uncharacterized protein8671e-090
A9NYS3 Putative uncharacterized protein8015e-083
B4FUZ9 Putative uncharacterized protein7962e-082

Arabidopsis top hits (Blast detail)Scoree value
AT3G25920.1 RPL15; structural constituent of ribosome11176e-122
AT3G25910.1 zinc ion binding6946e-073
AT3G24740.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G25910.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2474e-021
AT3G24740.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G25910.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2474e-021
AT1G68140.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G08460.2); Has 145 Blast hits to 136 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2162e-017

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
115  50%
 
82  20%
 
103  30%

Unigene MembersMember information