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Information for unigene UN20087
| FASTA Sequence |
| Unigene ID: UN20087 | Length: 1336 |
SSR | SNP | GAAAGAGTGAGTGTACAGTCACACTGTAGACAACTTTGAAGAGAGAGAGAGAATAGAATGGGAAGTGCTTCACTTGTCTTGTTTGC
GCGACTCTCGGGTTTAGTAATAGCGGTTTTGGTTGTGTACTGGGCTCTGTTGCTCGTCCCTCATCAAGGCCTCACATACTCTACTC
TTCATCCTCTGCTGATGGTGATTGGCTTCATTCTTGTAAGTGGAGAAGCGATTCTGATACACAGATGGTTGCCTGGTTCAAGAAAA
ACGAAGAAAGCAGTTCATCTATGGCTGCAAGGAATAGCATTGGTCTCTGGTGTGTTTGGGATATGGACAAAGTTCCATTACCAATC
TGGAGTTTTCTCAAACTTCTACAGTCTCCATTCTTGGATGGGTCTACTCTCTCTTTCTCTCTTCGCTGCTCAGTGGGTGACTGGAT
TCTTGAGCTTCTGGCATAGAGGAGAAGTCCGGACAACAAGAACCACGTTTCTTCCATGGCATGTCTTCCTCGGACTTTACACCTAC
GGTCTAGCCATTGCCACCGCCGAGACCGGACTACTTGAGAAGCTCACTTTCCTTCAGACAAAGCGAATCGTCCCAAGACGCTGTCA
TGAGTCAACGATCGTCAACGGTCTCGGGCTAGGCTTGGTTCTGCTCAGTGGCGTTGTTATAACAGCCGCTGTTTTGCCAAAGTATC
AGAGCCATTCTGGTAATGAGAAACTCGTTTATTCATCTCAAGATCGTCCCAAATGTTTGACTTCTTGAGTTCTTTTTTTCTTTTCA
AATTTTAGTTTTGTATTGATTTTTGGTGACAACTACACACGTCTCTCTGGTTGTACAAATGAATGTATTATTACCGCATTGTGATG
ATGAGACTTGTGTCAACAAACTTGGCTCCTCCAACTTTTCCTTGAATCTGAGACGGTAAAGGAATCACTCTTCTTTGGTCTCCAGC
TTCTATCAATAGCTCAAAGCCTCCTCTGTACTGCACTTTCATCAAAAGCAAAGATCGTTTTTTACAGTAACCAAAGAGAGTTCAAA
TGGAAATGAGATGAGGTGTTCTTTTCTTTACCTGGTACAGTTTGATTTCTGATTTTTCGAACCCTGGCATGAACAGAGTCACTGAC
TTCTTTGCGGCATCAAACGTCACTGGTGGTGTCAAGCAACTTCCTTGGCTTACTGTACCAAAAAAAATCTCCCTTACACTCAAGTT
CGCTTGGTCCATCAAAATCTTGTCCCAGTCTAAACCGTTCCTAGTAAACGGAACTGATGCAAAAGCAAAAGGCAGCGGCACAAACT
CTTCTTTTGTGCTTTTGTTTAACTCAGTTTTCAGGTTCGAAGAAGA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002890679 cytochrome B561 family protein [Arabidopsis lyrata subsp. lyrata] | 1054 | 2e-112 |
| NP_173935 cytochrome B561 domain-containing protein [Arabidopsis thaliana] | 1037 | 2e-110 |
| CAN78724 hypothetical protein VITISV_020007 [Vitis vinifera] | 740 | 6e-076 |
| XP_002281093 PREDICTED: hypothetical protein [Vitis vinifera] | 733 | 4e-075 |
| ACU16607 unknown [Glycine max] | 732 | 5e-075 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q6DYE4 Uncharacterized protein At1g26090, chloroplastic | 300 | 3e-026 |
| P10897 Cytochrome b561 | 263 | 5e-022 |
| Q95204 Cytochrome b561 | 261 | 9e-022 |
| Q95245 Cytochrome b561 | 244 | 8e-020 |
| Q5RCZ2 Cytochrome b561 | 243 | 1e-019 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C540 At1g26100 | 1037 | 1e-110 |
| A5B730 Putative uncharacterized protein | 740 | 4e-076 |
| C6T4J7 Putative uncharacterized protein | 732 | 3e-075 |
| B9HWN0 Predicted protein | 697 | 4e-071 |
| D5ADY3 Putative uncharacterized protein | 538 | 1e-052 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G26100.1 cytochrome B561 family protein | 1038 | 6e-113 |
| AT5G38630.1 ACYB-1; carbon-monoxide oxygenase | 461 | 5e-046 |
| AT4G25570.1 ACYB-2; carbon-monoxide oxygenase | 340 | 5e-032 |
| AT1G26090.1 unknown protein | 300 | 2e-027 |
| AT1G14730.1 LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: ACYB-1; carbon-monoxide oxygenase (TAIR:AT5G38630.1); Has 447 Blast hits to 446 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 321; Fungi - 5; Plants - 110; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | 258 | 2e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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