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Information for unigene UN20090
| FASTA Sequence |
| Unigene ID: UN20090 | Length: 1123 |
| SNP | GATGCTCGTGAAAATTAATTAATAAAAATATATGAAATTTATGTGTTTTCAAGCTAGCAATGCTAGTGCGACAGATGTCCGATCCC
AGAGTTGATGATTAAACCTAGAGCACAAGTGTAAAACACGATCACTCTCTTTGTTCTCAAAATCAAAATCACCCTTAACTGATTGA
TAAAACAATCTAGCCTTTTATGCGTCTTTTCCGGACCAAACTGAATCGCAATAAAATAGATATCTAGGCGGGCAGATAGGACTCCA
GCATCAGCTTGGCTGGGGAGGGAGCTAAAATCTCAACGATCAGGTATGTGTACTTCCATTCCTTATCTGCCTTGTCTTTAAACATC
TCCGTGTACACTTTCCCGTGACCATGAGGCCCACGGATGTAGAAGTTTACCTCCACATGCTCGACTCCGTCTTCATCTGTAAATAT
TCTGTTAGGTATACGTTGGCGAGCAGCTCGGTTTCTGGTTTCTTGTCCGTAGCCTGTGATGGGGGATCCAATCCTTACCCTCACCT
GACCGTCATCTTGAATTCTCTTCAACGCTTTGTCAAAGACCTTGTACTCTTTTGGTTGAAATATGAGCTCTTTAAACACAGCGTAC
CCAGAAGCCCCAGCGACCGCAAGCCCGGCCAGAATAACAAAACTGTAGGAAGCACCTTCTGTAAACGTTACAGGCTTTTCCGGGAT
ATGGTAGGTCGGAGAATCAAAAGGATCCTCCACAGTCACCACCTCTTTCTTAGCCTTATTCTGATGTTTCCCAGCTTCTTTGGAAG
TTCTGGACGCAAAAGATCTAGCCAACAAGTAAGAGGGCCTGATGTTCACTGGACAAGATTCCATACCTTGCGGATTCCGGAAGCGA
AACAACAGTCCCTTAGCTCCATTTGAGACCACACCACCCGTGAGACCAGAATCGGTAATGGCTTGCTGCCTTGATGCTCCTCTTTG
TACAAGGGTCATCAACGATTTTCGGATTTCACAAGGTTTTGAAGCGGAGGAAAACCGACCGGTCGAAGCGAGTTTCGATTTGGATA
GACTGACCATGGATCTCCTGAGGAGGTTCATCATCTCTCCTGTCCTGCTTTGTTAATCAGAAGAAAGTGTTTGGGTTGGGGTTGAG
GTTGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_001031562 uncharacterized protein [Arabidopsis thaliana] | 960 | 1e-101 |
| XP_002872975 hypothetical protein ARALYDRAFT_912250 [Arabidopsis lyrata subsp. lyrata] | 957 | 3e-101 |
| XP_002302508 predicted protein [Populus trichocarpa] | 789 | 1e-081 |
| XP_002511616 Import inner membrane translocase subunit tim21, mitochondrial precursor, putative [Ricinus communis] | 782 | 6e-081 |
| XP_002326838 predicted protein [Populus trichocarpa] | 781 | 8e-081 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9BVV7 TIM21-like protein, mitochondrial | 175 | 6e-012 |
| Q5U2X7 TIM21-like protein, mitochondrial | 157 | 8e-010 |
| Q7S8S5 Mitochondrial import inner membrane translocase subunit tim-21 | 138 | 1e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2V3L9 Putative uncharacterized protein | 960 | 1e-101 |
| B9GP93 Predicted protein | 789 | 7e-082 |
| B9RD27 Import inner membrane translocase subunit tim21, mitochondrial, putative | 782 | 4e-081 |
| B9MV24 Predicted protein | 781 | 6e-081 |
| C6TAF0 Putative uncharacterized protein | 753 | 1e-077 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G00026.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim21 (InterPro:IPR013261); Has 168 Blast hits to 168 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 52; Plants - 20; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | 961 | 4e-104 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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