RadishBase

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Information for unigene UN20110

FASTA Sequence

Unigene ID: UN20110	Length: 1144		SNP
CTGGTAAGCAAAACTGGACGAGCCAGCAAATTTAGAGCTCTATTTATTGAAGAAAATAGAAATAAAACTTACTGTAAAGGTCTTAT GGAAATACGATGTTTCTCAGTGTCATCTTAGGGAACAACGGTTTCAACAGCATAATAAGATTCAAAGGTTACCGTCCATTGTAAGA AGCACCTTGTACAAATCTGGACGGCGGTCACGAAACACTCCCCAGCTTTGCCTCTTCGACTTGATCTTGTCAAGATCAAACTGTGC CACGAGAACAGCTTCCGTTTTGTCATCGGCCTCGGCCACAATTTCACCCGTCGGTCCGGTAATGAAGGAGTTTCCATAGAAAGTGA TCTGACTCGGTCCATGCTCGGTTTCAATTACTTCCTTCCCTATGCGGTTCGAAGCTACTAGAGGCACCACATTAGCTCCAGCATGC CCTTGCATGACTCTCTTCCAATGATCACGCGAATCCAACCCCTGGTCTTGAGGCTCAGAGCCAATGGCAGTTGGATAAAAGAGTAT TTCAGCACCCTGTAGAACCATAGCTCGAGCTGCCTCAGGAAACCATTGATCCCAACATATAGCAACTCCAATTTTTGCAAACTTTG TCTGGAAAACCTTAAAGCCAGTGTCTCCAGGATTGAAATAAAATTTCTCTTGATACCCTGGTCCATCAGGAATATGGGACTTCCTA TAAATCCCGAGATCAGTTCCATCAGCGTCAATAATGGCAATAGAGTTGTAATGCGCATTGTTTGCCTCCTCGAAGAAGCTAACGGG TATCACAACACCCAGCTCCTTTGCCAGCTTCTGCATCCTTGCAATGGTAGGATGGTCCTTGTAAGGCTTGGCTCTCTGAAAGAAGT CTTCTCTTTGTGCTTGACAGAAGTAATATCCCTCAAAAAGTTCCTGAATAAGAACGATGTTTGCTCCTTTTGAGTGTGCTTCTCTG ACCAGCCTTTCGGCGGCGGCGACGTTGGAGGAGATATCGTCGGAGCAGGCGAATTGAAGAGACGAAACAACCACTTCACCCCTTCT TCCTTCCATTTTCCGTTCCTCTCTGTGTTTTCTCTCGGGTGGGTGAAAGAGATATGACTGTCACTTGGAGGAAAAGGAGAGAGAGA ATATATCCGCTTACCTTTTTCCGTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_565650 N-carbamoylputrescine amidase [Arabidopsis thaliana]	1497	8e-164
XP_002274913 PREDICTED: hypothetical protein [Vitis vinifera]	1400	1e-152
CBI28309 unnamed protein product [Vitis vinifera]	1388	3e-151
XP_002328115 predicted protein [Populus trichocarpa]	1386	6e-151
ACU24353 unknown [Glycine max]	1386	6e-151

Swiss-Prot top hits (Blast detail)	Score	e value
Q8VYF5 N-carbamoylputrescine amidase	1369	2e-150
Q3HVN1 N-carbamoylputrescine amidase	1363	1e-149
Q9XGI9 N-carbamoylputrescine amidase	1361	2e-149
Q93XI4 N-carbamoylputrescine amidase	1279	6e-140
Q5RBM6 Beta-ureidopropionase	254	5e-021

TrEMBL top hits (Blast detail)	Score	e value
B9DGV9 AT2G27450 protein	1497	5e-164
A9PJQ3 Putative uncharacterized protein	1386	4e-151
B9MYV7 Predicted protein	1386	4e-151
C6TN61 Putative uncharacterized protein	1386	4e-151
A9NMW3 Putative uncharacterized protein	1318	3e-143

Arabidopsis top hits (Blast detail)	Score	e value
AT2G27450.1 NLP1 (NITRILASE-LIKE PROTEIN 1); N-carbamoylputrescine amidase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds	1498	2e-166
AT2G27450.2 NLP1 (NITRILASE-LIKE PROTEIN 1); N-carbamoylputrescine amidase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds	1370	2e-151
AT5G64370.1 BETA-UP (beta-ureidopropionase); beta-ureidopropionase	249	2e-021
AT5G12040.1 carbon-nitrogen hydrolase family protein	232	1e-019
AT5G12040.2 carbon-nitrogen hydrolase family protein	161	2e-011

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	4			40%


6	2			20%


8	2			20%


12	1			10%


7	1			10%

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