Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN20140

FASTA Sequence
Unigene ID: UN20140Length: 2162 SSR 
GGAGAGGAATCCATTTCCTGTTTAGATTCCGAGTGACGCCTCTCTCTCTCTCTCTCTCCCCTCTTCTCGATTCGTTTCTTTGCCGG
AGCTCGCAGTTTGGTGGAGAAAGATGGCTCCCAACGATCCTAAAAACGGTGGCGGCGGTTTCTTCGCTTCTCTTGCTTCCTCAATC
TCCAATTTGGGATCGGCCATGACCAAATCAGTTAACGGTTTGGTTGGCTATGAGGGACTTGAAGTTATTAACCCTGAAGGAAGTAC
AGAAGATGCAGCCGAGGAAGCAAACAGAGGAAGATGGAAGCAAGAGGATCGAGATGGTTATTGGAAGATGATGCAGAAGTACATAG
GATCTGATGTCACATCAATGGTTACCCTTCCCGTGATTATCTTTGAACCTATGACAATGCTCCAGAAAATGGCTGAGTTGATGGAA
TACTCGCATCTATTAGACATGGCAGACCAAACTGAGGACCCTTATATGCGCATGGTGTATGCGTCATCATGGGCTATCTCTGTGTA
CTATGCTTTCCAACGTACTTGGAAACCGTTTAATCCAATCCTCGGAGAGACTTATGAGATGGCTAATTACAATGGTGTTAACTTCA
TATCTGAACAGGTCAGTCATCACCCGCCAATGAGCGCTGGCCATGCTGAAAATGAGCATTTCACTTATGATTGTACATCAAAACTG
AAAACAAAGTTTCTGGGCAATTCCATTGACGTTTACCCAGTAGGAAGGACACGAGTGACACTTAAAAGAGATGGAGTGGTTCTTGA
CTTGGTACCTCCTCTGACCAAAGTTCACAACCTAATCTTTGGACGAACTTGGGTGGATTCTCCTGGAGAAATGATCATGACCAACC
TGACCACTGGTGACAAAGTCGTGCTTTACTTCCAACCATGCGGCTGGTTCGGATCTGGTCGATATGAAGTGGACGGATATGTCTAT
AACGCCTCTGAGGAGCCCAAGATACTCATGACTGGTAAATGGAACGAGTCGATGAGCTATCAGCAGTGTGACGGTGAAGGTGAACC
TCTCCCAGGCACCGAACTAAAGGAGGTCTGGAAACTCGCTGATGTTCCAAAAGATGACAAATACCAATACACACACTTTGCTCACA
AGATCAACAGCTTCGACACTGCCCCGAAAAAGCTGTTGCCGTCTGATTCACGGTTACGCCCTGACAGATACGCACTAGAGATGGGT
GACGTGTCCAAATCCGGATATGAGAAGAGCAGCATGGAAGAGAGACAGAGAGCTGAAAAGAGAACCCGCGAAGAGAAAGGCCAAAG
CTTTACTCCCAAGTGGTTTGATATAACCGAAGAAGTCACTCCTACACCATGGGGGGATCTCGAAGTTTACCAGTTCAACGGAAAGT
ACTCAGAACACCGGGAAGCTGCGGATAGCTCTGAAGATAATACGGACGACCCTAAGTCAATCACATTCAACCCATGGCAGCTTCAA
GATTTGTCTACCTAATGAATCGCTCCAAAAGATAAGAAAAAAAAAAGATCAAAATCTTTTGGTAACAGATGTTGTAATTCTTATTC
TCAGCTTTCTTTACTTTCTCTAGTAGTAGTTTTACAAACTTTTATTGTTCTTTTATATTTAAATCAAATCTCTCTTTCATTCTCGT
TGCCATAGCCATCTTCTTCTTCTTCTTCTTGGGGCATGATCAAACCCTCACCAAACCATCTTGGAGGATCGTATCCAGACCCACCA
AAAGGATTGCAGCGGCAGAGACGCCATGTGGTGAGAACAGTGCCTTTGAGAACTCCATATCTTTTGTAAGCTTCCATAGAGTACTC
ACTGCAAGTTGGAACGTAACGGCGGCTTCTAGGTAACACCGGCGATATCTCCCTCTTGTAGAATCTCAGCATTGCTAAAGCTACTT
TGACTCCCACACTCTCCTGCTCTTCCCCATCTTTAGGAGATTCAGGGTCTGGACTCGAAGGCGTTGATTTCGCGGATAAGCAACGG
AGCTGATGCTTGTTCGTATGAGAAAGATGATGAAAGCTCAAGCGAGACGTACTGAATTTCAAGTGAATTTTAGGAGGATTAGGGTT
TTCAGAGATTAAGTGGGTTGCATAAGGACGATGAACGGAGACGACGACGACCGCCATCAAATGCAAAACTCATACAAACAAAGCTT
TTACTTTGAACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_187541 OSBP(oxysterol binding protein)-related protein 3B [Arabidopsis thaliana]23261e-259
XP_002882612 oxysterol-binding family protein [Arabidopsis lyrata subsp. lyrata]23181e-258
XP_002870951 hypothetical protein ARALYDRAFT_324883 [Arabidopsis lyrata subsp. lyrata]21916e-244
NP_195830 Oxysterol-binding family protein [Arabidopsis thaliana]21835e-243
XP_002864633 oxysterol-binding family protein [Arabidopsis lyrata subsp. lyrata]20241e-224

Swiss-Prot top hits (Blast detail)Scoree value
Q9SR32 UPF0161 protein At3g093106535e-067
Q54QP6 Oxysterol-binding protein 85962e-060
Q54ID7 Oxysterol-binding protein 115415e-054
Q9BXW6 Oxysterol-binding protein-related protein 14457e-043
Q8K4M9 Oxysterol-binding protein-related protein 14449e-043

TrEMBL top hits (Blast detail)Scoree value
Q9SR33 Putative oxysterol-binding protein23269e-260
Q9LZM1 Putative oxysterol-binding protein21834e-243
Q93Y40 Oxysterol-binding protein20141e-223
B9T255 Oxysterol binding protein, putative20095e-223
A9PH21 Predicted protein19962e-221

Arabidopsis top hits (Blast detail)Scoree value
AT3G09300.1 ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B); oxysterol binding23321e-262
AT5G02100.1 UNE18 (UNFERTILIZED EMBRYO SAC 18); oxysterol binding / sterol binding21832e-245
AT5G59420.1 ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C); oxysterol binding20147e-226
AT3G09310.1 unknown protein6544e-068
AT4G08180.1 ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C); oxysterol binding / phosphoinositide binding4537e-045

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
114  40%
 
123  30%
 
71  10%
 
212  20%

Unigene MembersMember information