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Information for unigene UN20161
| FASTA Sequence |
| Unigene ID: UN20161 | Length: 1512 |
SSR | | GGATTTCCTTCTGACCAGAAACCAGAGAGAGAGAGAGTTTCATTACCAAAGAGAGAGAGAGATAGAAAGGAGAGAGAGAAGGTAGA
GAGAGAGTTTGCGGAGGAGCTTCTTCGTAGGGTTCATCGTTATTAACGTTAAATCTCTATCCCCCTACGTCAGCTGAAGAAAACAA
TAAGGGTGCAGGTGGAGGAATGCAGGTATCTCCTTCTCCCAAGAAGTCAGAAACCGACACCCTCAAACGCGTACCCTGCGAGACAC
CTCCCTTCACAGTAGGACAGCTCAAGAAAGCGATCCCACCGCACTGTTTCAAACGCTCCATCCCTCGCTCATTCTCCTACCTCATC
TGGGACATCATCATAGCCTCCTGCTTCTACTACGTCGCCACCACTTACTTCCCCCTCCTCCCTCACCCTCTCTCCTACTTCGCCTG
GCCTCTCTACTGGGCCTGCCAAGGCTGCGTCCTAACCGGCGTCTGGGTCATAGCCCACGAGTGCGGCCACCACGCTTTCAGCGACT
ACCAGTGGCTTGACGACACCGTCGGTCTCATCTTCCACTCCTTCCTCCTCGTCCCTTACTTCTCCTGGAAGTACAGTCACCGACGC
CACCATTCCAACACCGGCTCCCTCGAGAGAGACGAAGTCTTCGTCCCCAAGAAGAAGTCCGACATCAAGTGGTACGGCAAGTACCT
CAACAACCCTCTCGGACGCACCGTCATGCTAACCGTACAGTTCACTCTCGGCTGGCCCTTGTACTTGGCCTTCAACGTCTCCGGCA
GGCCTTACGACGGCGGTTTCGCTTGCCATTTCCACCCCAACGCTCCCATCTACAACGACCGTGAACGCCTCCAGATATACGTCTCC
GACGCCGGTATCCTCGCCGTGTGCTACGGTCTCTACCGCTACGCAGCTGCTCAAGGACTGGCCTCGATGGTCTGCCTCTACGGAGT
CCCGCTTCTGATTGTCAACGGGTTCTTAGTTTTGATCACTTACTTGCAGCACACGCACCCTTCGCTGCCTCACTACGACTCCTCGG
AGTGGGACTGGTTGAGGGGAGCCTTGGCTACCGTGGACAGAGACTACGGAATCTTGAACAAGGTCTTCCACAATATCACGGACACG
CACGTGGCGCATCACCTGTTCTCCACGATGCCGCATTACCACGCGATGGAAGCTACCAAGGCGATAAAGCCGATACTGGGAGATTA
TTACCAGTTCGATGGGACGCCGGTGTTTAAGGCGATGTGGAGGGAGGCGAAGGAGTGTATCTATGTAGAGCCTGACAGGCAAGGTG
AGAAGAAAGGTGTGTTTTGGTACAACAATAAGTTATGAGGAGGATGATATGGTGAAAGAAGAACAGAAGAAGATATTGTCATTGAT
CTTTTCTATTGTTGTCTCTCTGGTCGTCTTTGTTTTTAAGAAGCTATGTTTTTTTTTCAATAATCTAAATTGTCCATTTTGTTGTG
TTTTCTGACATTTTGGCTAAAATTATTGTGATATGGGACGTTAGTAGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ACN53522 fatty acid desaturase 2 [Brassica juncea] | 2093 | 9e-233 |
| ACP39502 delta-12 oleate desaturase [Brassica napus] | 2093 | 9e-233 |
| CAD30827 fatty acid desaturase 2 [Brassica rapa] | 2088 | 3e-232 |
| ACP39504 delta-12 oleate desaturase [Brassica napus] | 2088 | 3e-232 |
| AAF78778 delta-12 oleate desaturase [Brassica napus] | 2087 | 4e-232 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q39287 Omega-6 fatty acid desaturase, endoplasmic reticulum | 2065 | 7e-231 |
| P46313 Omega-6 fatty acid desaturase, endoplasmic reticulum | 1934 | 1e-215 |
| P48631 Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 | 1663 | 3e-184 |
| P48630 Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 | 1527 | 2e-168 |
| O81931 Delta(12) fatty acid dehydrogenase | 1275 | 3e-139 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C0LEJ5 Fatty acid desaturase 2 | 2093 | 6e-233 |
| C3W518 Delta-12 oleate desaturase | 2093 | 6e-233 |
| C3W519 Delta-12 oleate desaturase | 2088 | 2e-232 |
| C3W520 Delta-12 oleate desaturase | 2088 | 2e-232 |
| Q8LPE8 Fatty acid desaturase 2 | 2088 | 2e-232 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G12120.1 FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase/ omega-6 fatty acid desaturase | 1935 | 7e-217 |
| AT3G12120.2 FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase/ omega-6 fatty acid desaturase | 1935 | 7e-217 |
| AT2G29980.1 FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase | 604 | 1e-062 |
| AT5G05580.1 FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase | 556 | 6e-057 |
| AT3G11170.1 FAD7 (FATTY ACID DESATURASE 7); omega-3 fatty acid desaturase | 547 | 6e-056 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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