RadishBase

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Information for unigene UN20163

FASTA Sequence

Unigene ID: UN20163	Length: 1082	SSR
AGGGGGTTTATTCACTCTATTATATGATTTTAATACAAATATCATTTCAGAAGCAAACAGGAATCTCACACATTTACAGAGAAACT ACACACAAAAGAGGCAAACCTCAGAGAGAGAGAGAGAGAGAGAGAAGAATCAGATTGAGTTTGGAATACACAAGGAATAACAATTC GAGTTTTTTTTTGTATGAATATGGATATATGTCTCACTAGCTGCAGCAGCCAGTTTGAGGAGTAGTCTGGTGATCTGTGTTCTGCT TCAAGATGTTTCTCTTAACAGCACTCGATCCTTCTTCCAAAAGACTAGGTACCTCCATTATCTTCAAAGCCAGCTCTTCGAAACAT TGCTCTACGTTTTGTCGAGTTCTAGCACTACACTCGAGAAACATGCACTTGAGTTCTTTCGCTAGAGCAATCCCTTCTTCTCTGCT AACTCCTCTCTCAGATTCTCTATCAACTTTGTTTCCAACGAGCATCCTAACGCATTCTTGGTTAGTGGAGTAAAGCTCAATCTCCT TACCCCACACATCTACTAAGTTTGTAAATGTCTCCCTTCTCGTCACATCATACACGAGGATGATTCCTTGGGCGCCTCTGTAGTAA GAGCTCGTCAATGTTCTAAACCGTTCCTGCCCAGCTGTGTCCCAGATTGTGAGTTTCAGTCTTTTGCCTCCTACTGTCAACTGTTT AATCTTGAAATCAACACCGATGGTAGGAGCGAGATCTTCAACGGAGGTGGAAATGAAGCTGACAAGCAAACTGCTTTTACCAACAC CCGAATCTCCAATCAACAATATCTTAAACGACAGATCGTTTCCACTTCTCCCAGATGACGACCCCATTCTCTAAAACGAACAAGCT TTCCAAACACAAAAACCACTTTTAGATACTTGCTCGATCTGTGAAGAAACCTTACGAGGGAAAGAACAAGCTAGGAGAAGAAGAAA CCCACAGAGAGATCAAATCCAACTTATTCAACAACTTAATAAAAAGGAGATTTCTTTATTAATTAAAATAGGAATCTCATGTAGCT GTCTGTAATGCCTAATGATGATGATGATGCTTAGCTACATTCTTCTTTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_568121 RAB GTPase-C2A [Arabidopsis thaliana]	1011	2e-107
XP_002267276 PREDICTED: hypothetical protein [Vitis vinifera]	897	3e-094
XP_002326383 predicted protein [Populus trichocarpa]	885	7e-093
XP_002322909 predicted protein [Populus trichocarpa]	882	1e-092
CAA98163 RAB1X [Lotus japonicus]	868	6e-091

Swiss-Prot top hits (Blast detail)	Score	e value
P36862 GTP-binding protein yptV3	517	1e-051
Q6DHC1 Ras-related protein Rab-18-B	489	2e-048
Q5ZLG1 Ras-related protein Rab-18	487	4e-048
Q5EB77 Ras-related protein Rab-18	482	2e-047
Q0IIG8 Ras-related protein Rab-18	480	3e-047

TrEMBL top hits (Blast detail)	Score	e value
O49841 AtRab GTP-binding protein	1011	1e-107
B9MTI0 Predicted protein	885	5e-093
B9IFU0 Predicted protein	882	1e-092
Q40206 RAB1X	868	4e-091
B9S0D3 Putative uncharacterized protein	866	7e-091

Arabidopsis top hits (Blast detail)	Score	e value
AT5G03530.1 RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding	1012	5e-110
AT3G09910.1 ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B); ATP binding / GTP binding / transcription factor binding	832	4e-089
AT1G43890.1 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding	788	5e-084
AT1G43890.2 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding	788	5e-084
AT1G43890.3 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding	788	5e-084

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	4			67%


11	2			33%

Unigene Members	Member information