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Information for unigene UN20163

FASTA Sequence
Unigene ID: UN20163Length: 1082 SSR 
AGGGGGTTTATTCACTCTATTATATGATTTTAATACAAATATCATTTCAGAAGCAAACAGGAATCTCACACATTTACAGAGAAACT
ACACACAAAAGAGGCAAACCTCAGAGAGAGAGAGAGAGAGAGAGAAGAATCAGATTGAGTTTGGAATACACAAGGAATAACAATTC
GAGTTTTTTTTTGTATGAATATGGATATATGTCTCACTAGCTGCAGCAGCCAGTTTGAGGAGTAGTCTGGTGATCTGTGTTCTGCT
TCAAGATGTTTCTCTTAACAGCACTCGATCCTTCTTCCAAAAGACTAGGTACCTCCATTATCTTCAAAGCCAGCTCTTCGAAACAT
TGCTCTACGTTTTGTCGAGTTCTAGCACTACACTCGAGAAACATGCACTTGAGTTCTTTCGCTAGAGCAATCCCTTCTTCTCTGCT
AACTCCTCTCTCAGATTCTCTATCAACTTTGTTTCCAACGAGCATCCTAACGCATTCTTGGTTAGTGGAGTAAAGCTCAATCTCCT
TACCCCACACATCTACTAAGTTTGTAAATGTCTCCCTTCTCGTCACATCATACACGAGGATGATTCCTTGGGCGCCTCTGTAGTAA
GAGCTCGTCAATGTTCTAAACCGTTCCTGCCCAGCTGTGTCCCAGATTGTGAGTTTCAGTCTTTTGCCTCCTACTGTCAACTGTTT
AATCTTGAAATCAACACCGATGGTAGGAGCGAGATCTTCAACGGAGGTGGAAATGAAGCTGACAAGCAAACTGCTTTTACCAACAC
CCGAATCTCCAATCAACAATATCTTAAACGACAGATCGTTTCCACTTCTCCCAGATGACGACCCCATTCTCTAAAACGAACAAGCT
TTCCAAACACAAAAACCACTTTTAGATACTTGCTCGATCTGTGAAGAAACCTTACGAGGGAAAGAACAAGCTAGGAGAAGAAGAAA
CCCACAGAGAGATCAAATCCAACTTATTCAACAACTTAATAAAAAGGAGATTTCTTTATTAATTAAAATAGGAATCTCATGTAGCT
GTCTGTAATGCCTAATGATGATGATGATGCTTAGCTACATTCTTCTTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_568121 RAB GTPase-C2A [Arabidopsis thaliana]10112e-107
XP_002267276 PREDICTED: hypothetical protein [Vitis vinifera]8973e-094
XP_002326383 predicted protein [Populus trichocarpa]8857e-093
XP_002322909 predicted protein [Populus trichocarpa]8821e-092
CAA98163 RAB1X [Lotus japonicus]8686e-091

Swiss-Prot top hits (Blast detail)Scoree value
P36862 GTP-binding protein yptV35171e-051
Q6DHC1 Ras-related protein Rab-18-B4892e-048
Q5ZLG1 Ras-related protein Rab-184874e-048
Q5EB77 Ras-related protein Rab-184822e-047
Q0IIG8 Ras-related protein Rab-184803e-047

TrEMBL top hits (Blast detail)Scoree value
O49841 AtRab GTP-binding protein10111e-107
B9MTI0 Predicted protein8855e-093
B9IFU0 Predicted protein8821e-092
Q40206 RAB1X8684e-091
B9S0D3 Putative uncharacterized protein8667e-091

Arabidopsis top hits (Blast detail)Scoree value
AT5G03530.1 RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding10125e-110
AT3G09910.1 ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B); ATP binding / GTP binding / transcription factor binding8324e-089
AT1G43890.1 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding7885e-084
AT1G43890.2 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding7885e-084
AT1G43890.3 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding7885e-084

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
124  67%
 
112  33%

Unigene MembersMember information