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Information for unigene UN20165
| FASTA Sequence |
| Unigene ID: UN20165 | Length: 1358 |
| SNP | TTCAGCAGCCAGCTTAATCTAGACTATCATAAGATATTTTCAACCAAATATGACAAAATCTTCTATAATTGTAACATGGTTCATGA
AAGAATATGTGATGTAAAATTAACCAACGAGCAGAAATATACTTGAACAAAAACTTATCATATCTCTAGACCATATTCCTCGACCA
CCTATGGATGTACTACAATTGTTAAGCATATGGGTATATAACTAATTTTGGCTTCTCATGGGTATACTTTGATATAATTAAGCTAA
AGAATACTTATCAACGATTTGCAAAATATACTTATACCTTTTCATTTGTTTAAAATATGTGAAAAAAAATGTGGAAATTATAAATT
TAAAAATTAATAAAATATGATAATTCCAACATAATTAACTTATAAAGCTTTAAGTTTTTTAATCAAGATGGAATATAGCATAATAT
TGAAACAATGAAAGTGTACCATAAAGACCGTCAAAATGGCGTTTACATGCGATAAGGGAACCTAAATACGAACAGAAACAAACTTG
ACAAAGAAATCCTCAAAATCTTAAAAAGGGGTTTAAGCAGCAACGGGCTTAGCGGCAGCAGAGGAGAGTCTAGACCTCTTCTTGGC
TAAACTCTCACTACGGCGATCACGCTGCTCCTTGAGTCTCGAGGCAAGAAGCTTCTGGTACTCGGCAGCATCAGAGTTGGCCTTGG
CGATCCTCTTCTTCTTGTCGGCAATTCTAGCTCTCTTCCTCTGAAGTGTCAAAGGAGTCACAAGCCTCTGGATCTTGGGGGCTTTG
CTCACTTCCTTACCTTTCTTGTTAGTGAATTTGCGGCGGTAAGTGTTGACATACTTCCTGACATCATCATCCTTAGTGAGGTTAAA
CAGTTTACGGATCTTAGAAGCTCTCTTAGGTCCCCTCATCCTTGGCTTCTCGGTATCGGTAAGCCCGGGAAGATCCTTCTCACCCT
TCTTAACAATGACCAAGTTAAGCACAGAAAGGTCCTGGCTAACAATGCAACCACGGACAGACTTCCTTCTCCTCTCTCCAGTCCTC
CTTCCATGTCCTCTGAAGCAAGGAGTACCTCGGTGAAGCAAGAGGCGGACACGACCAGGGGTCAGAACTCCCTGTTTCATCGGGAA
ACCTTGCTTGTCGCATCCTCCCATGATCTTGAACACGTACCCCTTGAACTCCTCGCCCAAAGCATCTCCGCTAACTTCCTGAGAGA
GCCTCTTGTCGTAAAAAGCACGGAGCTTCTGGTCGTCATCGATCTCGAGCTTCTTCTGGCATCCAGTTGTCGGATTTGCGACGTTG
AACTTCATCGTCTTCGATTGAAACTGGTACTACAGCTACCCGCGAGAGAAGATGATAAGATATTATAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAZ66937 117M18_18 [Brassica rapa] | 1254 | 2e-135 |
| XP_002863274 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1222 | 8e-132 |
| XP_002873453 EMB3010 [Arabidopsis lyrata subsp. lyrata] | 1218 | 2e-131 |
| NP_196598 40S ribosomal protein S6-2 [Arabidopsis thaliana] | 1216 | 4e-131 |
| NP_194898 40S ribosomal protein S6-1 [Arabidopsis thaliana] | 1214 | 7e-131 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P51430 40S ribosomal protein S6-2 | 1216 | 2e-132 |
| O48549 40S ribosomal protein S6-1 | 1214 | 3e-132 |
| Q9M3V8 40S ribosomal protein S6 | 1175 | 9e-128 |
| P29345 40S ribosomal protein S6 (Fragment) | 810 | 2e-085 |
| P62753 40S ribosomal protein S6 | 788 | 7e-083 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q4AC02 117M18_18 | 1254 | 1e-135 |
| Q3HVK4 Ribosomal protein S6-like protein | 1186 | 8e-128 |
| B9RJN4 40S ribosomal protein S6, putative | 1169 | 7e-126 |
| Q2VCJ5 Putative uncharacterized protein | 1161 | 6e-125 |
| A9P9Y9 Predicted protein | 1160 | 8e-125 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G10360.1 EMB3010 (embryo defective 3010); structural constituent of ribosome | 1217 | 1e-133 |
| AT4G31700.1 RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome | 1214 | 2e-133 |
| AT4G31700.2 RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome | 890 | 9e-096 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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