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Information for unigene UN20166
| FASTA Sequence |
| Unigene ID: UN20166 | Length: 1046 |
SSR | SNP | CCATATAAAATCCGTGAACTTTTAATAAATAGTTTCGGATTTAATCTTATTAATTTTGCATTAACAAGTTTACAACTTTCACAAGG
TTATAAGATAAAAACATAATATATATATATAAAGCGTGGAGGAGGATCATCGTCACAGAAGAAAGAGCTCTCTCTGTATTAGTTTT
AAACATCAAATCAGACAAATGAGTTTTCTTGGTGATCTAAGAAACGTGGTGTGAAGGAGGAGAAAGTAAAGAGTTTGATTGATGCC
TGGTCAGGTCATACATAGGCTTTTTGCTCTAAAAGCAAAAGAGATGCTTCTTCTTCTTCATCTTCTGGAATTGAGCTTCTTCTTGA
CGGTCAATGTAAGCAAGCAACTCTTCTTGCCTCATCAGAGCTTCGTAAAGCGCTTTCTTAGTAGCTATGAGCTCTGCTTCAAGTGC
GTCCACTCTGCACACAGCTGCGTTTAACAGTTCCTCTTTCTCGCAAGGCATCTCATTCGGCTTTGTTTGGAGCGTCCCGATTTTTC
CCTCTAGCTCGTTTAGTTTCTTCATCACTGAAGTTAGGAGCTCCGTCTCTGTGAGATCTGGTACTGGAGAAGGAGGGCGAGACTCC
TCTTGACTTGTTGCTACTTCACCGTTAGAACCGAGTAGTTCCGTTGCGTTTACTTCGGTTTGTGGTTGGGAAGCAGGAAGTTTCTT
GATCACACGGAAAGGTACTGCTCGGAAGAATGTGAAAACTGCCATCACGTATGCTATGATCATTACTAGGACTCGAGCTCGGATGC
CTTCAGGGTCCTTTGGAGCGGTTGGAGACATTAAATCCCCTTTTGAGGCAACTCTCTGGAAGGCGGGTTTCACTTTCCAGGTTGCA
TCAACGGCTTTGTCAACCATCGGTACATACTCATCATAGCCCAGAAGACCACCGGCCAAGCTCGTTTCACCTTTTATCTTTGCCTC
TTCACGAACAGGCGTCAAGCGGAGATGGGAGAAACTCTTTATTGCCTTTGGAGATCCGATATCTTCGGCATCAGATCCTGACTCTG
CAGTTGACGTGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002878555 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1028 | 2e-109 |
| BAD44210 putative phosphatidylinositol/ phosphatidylcholine transfer protein [Arabidopsis thaliana] | 994 | 1e-105 |
| NP_179747 sec.4-like phosphatidylinositol transfer protein [Arabidopsis thaliana] | 994 | 1e-105 |
| NP_001118356 sec.4-like phosphatidylinositol transfer protein [Arabidopsis thaliana] | 994 | 1e-105 |
| AAD23696 putative phosphatidylinositol/phosphatidylcholine transfer protein [Arabidopsis thaliana] | 815 | 8e-085 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B3H588 Uncharacterized protein At2g21520.2 | 994 | 1e-105 |
| Q67YM1 Putative phosphatidylinositol/ phosphatidylcholine transfer protein (Fragment) | 994 | 1e-105 |
| Q9SJS7 Putative phosphatidylinositol/phosphatidylcholine transfer protein | 949 | 2e-100 |
| B9RH84 Phosphatidylinositol transporter, putative | 735 | 1e-075 |
| B9H0T8 Predicted protein | 723 | 3e-074 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G21520.1 transporter | 995 | 4e-108 |
| AT2G21520.2 transporter | 995 | 4e-108 |
| AT4G39170.1 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative | 443 | 4e-044 |
| AT1G75370.1 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative | 298 | 3e-027 |
| AT1G75370.2 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative | 295 | 6e-027 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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