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Information for unigene UN20169

FASTA Sequence
Unigene ID: UN20169Length: 983 SSR 
GGAAAATCAATTTTGTGTGTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATTTCTAGGGTTTGTTCGATTCTCCGACAACGATG
ATGAATCCCGAGGATGCGAAGGCGAAACGAGATTCGACGGAGGTGGAATCTGACTCTTCTGTCTCTAAAAAAACCGAAGATCGAAG
ATGAAGAAGACGACACAAGCATGGAAGAAGAAGAAGAATAAGAAAGCGATAACGAAGGCTTATGGAGTACCGACGATGATGACGTC
GTAAGGTCTCCGACGATTAACTATTCAAACTATCGAGATCCGGATCCGGTGTGGGATGTTGACAGTTACGACGAACACGAATTGGT
ATTCGATGCTGACGGCCGTGAAGGTTTCTCCAGCGACAAGGCGTACGCAGAGTTCCGCGAGTATAAAACCATGTGCTTTAAGAATA
GGGGGTTTTTAGATGATCCATTTAGATCCATCTACCCAATGAGAAACCTGGACGATCTCTGGACAACCATGACTAAGAGGCAATAT
TTGACTGATATTGCTTCGCTGTGTGTTAAGAAACTCAACGAGGAGCAGCGTTTGTCTGTGGAAGTTGTGAGCATTGTGAGAGGCAA
TCTAAAACCAGGAGATGGGTGGAAGCTGTACATCACTTTTATGGCTCGTGAGTCTCCGGGTGGTCCTCTCATCGAGTATCAAGCCA
AGGCCTTGGATTTTGGAGGAAAACCTCCCTTTCCCATTCTCTGCAGGCGTGCCTCTAGCATGCCCCTTTAATCAAGATTGGGTATG
ATGCTAGCTCTTCTCTTCTTGGCGACGATGAATATCAAAATATGTCTTTCCAGTTATAAGTACCATGCGTCCATGTGGATTTAGTT
TTTTTTTTTATTTTATTTTGGCGTTCAAACTTATGGCCCTACCTTTTAACTTGCATCGTATGATTATGGATTTCCACAATGGTTGC
TATGTTATATTCAATGTTTATTTTATATTTTCGATGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197211 cystatin-related protein [Arabidopsis thaliana]4171e-038
NP_197214 cystatin-related protein [Arabidopsis thaliana]3901e-035
NP_197217 cystatin-related protein [Arabidopsis thaliana]3847e-035
NP_197213 cystatin-related protein [Arabidopsis thaliana]3328e-029
XP_002873810 predicted protein [Arabidopsis lyrata subsp. lyrata]3264e-028

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9LFJ4 Putative uncharacterized protein F2K13_2404177e-039
Q9LFJ1 Putative uncharacterized protein F2K13_2703901e-035
Q9LFJ2 Putative uncharacterized protein F2K13_2603325e-029
Q58FU2 Putative uncharacterized protein2752e-022
Q9LFJ3 Putative uncharacterized protein F2K13_2502752e-022

Arabidopsis top hits (Blast detail)Scoree value
AT5G17090.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17120.1); Has 28 Blast hits to 26 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).4174e-041
AT5G17120.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17150.1); Has 47 Blast hits to 45 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 3; Plants - 32; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).3914e-038
AT5G17150.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, embryo, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17120.1); Has 23 Blast hits to 23 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3914e-038
AT5G17110.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17100.1); Has 34 Blast hits to 32 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3323e-031
AT5G17100.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17110.1); Has 36 Blast hits to 34 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2751e-024

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
95  100%

Unigene MembersMember information