RadishBase

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Information for unigene UN20175

FASTA Sequence

Unigene ID: UN20175	Length: 1026		SNP
AGCCAATGGAGACAAGTTTTGTAATAACAAAATAAAAAGACTCAATACACAAATCTACACGAGTATTCATGAAACATTAACTTAGC AAAGAGAAAACCATGATCCATTGTTCTTACAAAAAAAAGAAACAAAGATAAGGAAATTGATTTTAGTCATACTTCTTGAACCCAAA CTTTCCACTTGGGATTCGACTGAGAAAACCAGTATCAATCTTCTTGTAGTGACTATGAAACTTCATGAGCAGAGAATCAACAAAGC CATCAACTTCGTCTTCATATCTCTCATACAGAACCGGCATTGTGTGTGCTCCCACAAACCCAATATACAAAACAGTTAGGAAGTTG CAACAGCTCCCTATTATTGCGGCTAGCCATAGTCCAATCACAGCCATGAGGAACTGTTTCAAACTCCCTCTACAAGCCAAGTCCTG AAGAAACATCAAACCACGGTTAACCTCTGTACCAACGGTCACACCTACATCAGCAAAGAAATCTTTTGGAAGAACAAGGCGAGGCA CTCTAGACTGTGATGAGCGGTTTAGAGCCCCTGAGGCATTAGACCAAACGAACTGCACGATCATACCAAGCAAGAGACCGTAACAA ACGAGAGACAGAAAGTGGAAGTTGATCCACTCGAAAAGCACCCAGATTGCAGTAGCTCCCATCAGAACACTCGCAGAGATCTTCTT GTTCCTCCACAACAACACATCAGCAGATTTGCCACCGCCTAAGACATGATGAATCGGCTTCTCACGACCGAACAAGCGGTTGAAAC GAGAAGCGACGGTATCTTCTTCTTGTTCGAAGAAAGAAACGTTCTTTTTCTTATTAACCGTCTCGGTGAAGTTATCAACTAAATCG CCGATAACGTCCTCTACAATACTCTTCTCATGCATGATTCTTTGGAGGAGTTGGTGAAACAAGAATTTGGTTTCTGAGAATCTCAC AGAAATGAAAAGTTTTTTTTTTTTTCTTTTTGTAGATTCTGAGAGAGATGAATGAACCACCACAAAGAATGAAAGATTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_850552 reticulon-like protein B8 [Arabidopsis thaliana]	1137	4e-122
NP_566371 reticulon-like protein B8 [Arabidopsis thaliana]	1127	5e-121
XP_002884786 reticulon family protein [Arabidopsis lyrata subsp. lyrata]	1119	4e-120
XP_002302126 predicted protein [Populus trichocarpa]	865	1e-090
XP_002306759 predicted protein [Populus trichocarpa]	863	2e-090

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SS37 Reticulon-like protein B8	1127	2e-122
Q6DBN4 Reticulon-like protein B6	487	4e-048
O82352 Reticulon-like protein B5	485	6e-048
Q9SUR3 Reticulon-like protein B1	480	2e-047
Q9FFS0 Reticulon-like protein B4	475	9e-047

TrEMBL top hits (Blast detail)	Score	e value
B9GSR1 Predicted protein	865	9e-091
B9H858 Predicted protein	863	1e-090
B9S6H1 Putative uncharacterized protein	843	3e-088
C6TD25 Putative uncharacterized protein	779	8e-081
A2XMJ6 Putative uncharacterized protein	709	1e-072

Arabidopsis top hits (Blast detail)	Score	e value
AT3G10260.3 reticulon family protein	1138	1e-124
AT3G10260.1 reticulon family protein	1128	2e-123
AT3G10260.2 reticulon family protein	1128	2e-123
AT3G61560.1 reticulon family protein (RTNLB6)	487	3e-049
AT2G46170.1 reticulon family protein (RTNLB5)	485	6e-049

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	3			27%


8	4			36%


9	4			36%

Unigene Members	Member information