 |
Information for unigene UN20176
| FASTA Sequence |
| Unigene ID: UN20176 | Length: 2480 |
SSR | SNP | GGATAGTTTCATTTTGTCTAGGGAATAATTTTATTTTCTTCTCTCTCTCTCTATCAAACCAGAAGAAGAAAGATAGAAGATGGCTT
CGCCTAGCAAACGCCGAGAGATGGACATGATGAAATTGATGATGAGTGATTACAAGGTCGATACAATCAACGACGATTTGCATATG
TTCTATGTCACTTTCCATGGCCCCACTGACAGTCTTTATGAAGGAGGTGTATGGAAGATCAAAGTCGAACTTCCTGATGCTTATCC
TTACAAATCTCCTTCTGTTGGTTTCGTTAACAAGATTTATCACCCCAATGTTGATGAATCTTCTGGCGCAGTTTGCTTAGATGTAA
TAAACCAGACATGGAGTCCAATGTTTGATCTTATCAATGTCTTCGAGTCATTCCTTCCGCAACTGCTTCTATATCCAAACCCATCT
GATCCTTTCAATGGTGAAGCTGCCTCTCTCTTGATGCGAGACCGTCCTGCCTATGAGCTGAAAGTCAAAGAATATTGCAAGAGATA
TGCTAAACCAGAGGATATAGGAGCACCTGAGGAGATCTCAAGTGATGATCGGAATTGGAATGATGATAGCATGAGCGAACGTGGTT
CAGACTCTGATGACAACGATGAAATTGCTGGAAAAGCTGATCCTTGATGACTTCGTCACGAATCAAATCTCTCTTTGTACTTTGAT
TTATTAGTCCATTTCCAAAAATATAAACCATTGATGTTCATTGCATGGGAGGAGATAAAAACTTTCCTCTGTAAATGTGTAAAAAC
TTGTTTTAATTCTTTAGGATCATTGAAACTTTCATTTGCTTCAAATGTAAATAACATATAACAATTTGCAACCTTACTACAATAAA
ACATGAATTCATCTCTCCAATAACGTTCTTTTTTATACAAAGAACATATCTAAAGATGGGAGGATACTGCGGACAAAAGGACATAT
TCTTCTAAATAGCGACATACCAAGAAAGGAGAATTATTATTTGTTTTACTAAGGTAAGTTCACGACTCGCTGCTAGATTGCTTTCA
ATTGCCACATTGCATATCACCCACCACCTCTAAGCACTAAAAGGATAAAAGAGGCTCAATCTGTTTACAAATGGCTCGGCCTTCTT
TTACCAGCATCGGTTCTTAACCTCTTCACCGGATTAGCCCATCCCACTGAATCACCAGCCGTACCGCTGTTGTTTGGATGAGTGCT
TTGGTTTGGCCATCGTTGCTGCTGCTGAGCTAGCCTTGTCTCCCTTGTACTTGAACCAGACACCGGACTTCTAAGACCACGACCTA
CCATAGCTGGAGGTGAGACCGGGCTGCTTGAGCCAGCGGTTCGGGTTCTTGGAGCTGACTTTTCTCTGTCTTTCCTCTTCTTCTTG
CAGATTACTAGTTCCCCTGGATGAGTTAAAATTGGAGAGTCATCGGTGTGGCTTGATGTCCCGCCGAGCTTTGTTTCTTTCTGAGG
TATCTGTACTCTGATCCTTGAATTCTCGCGTTGTTGAGGTCTCTGAGGAGAGCTTGGCTCCGGTTCCTCCTCATATACAGGCTTTT
GCTTCTTACCCTGACTACTACCTGCTGCTCTCGGGGATAGTGTGGATACCAAAGTCGGGGTTGGGCCAGAGAAGGAAAGAGCATTC
CTTGCTTCTCGGAAATCTGTGTCCGGAAAAGACATCTTCAGCAGATCAAAGAACAGGTTGTGAACCTTCTTTGCTTCAGATCTCAC
CTCGTGTGAGAATCCATAGAATTGCATTGCTCCCCTTAGCATATACTGCACGTCAGATGCGAGTTCCATAACCCCTGTGTACTCTA
GCCTTTCTAACCGGTGATCAATCTCTCGCAGTTCCAATAGATTATTTACACCTCCAGCTGCATAACCAGTCTGAATTCTCTTCCAC
AAATTTGTCAGCATAGGCACAATCTGCTGACCTTCCTTGTCGATTCTCCTTTGGAGTTTGCTAATGACCGTTTTGCACCGTTTCTG
TATGTTGTGGGACATTCTTGCACCTGCACTTGAAGAGCCAATAGGACTAGTTCCATCCCATGTTTCTCTAGCAGCTTCAGTGTTGT
CCTCCTGGGTGGCATTCAATCTACCAGATTTTGGTGATGATACGTGCAGCTTGGAAGTATTAGCTACTTTCTTTGCAGGTAAACTC
CTAAGTCTCGAGGATGAATCACTCTGTTCTTGTCTTGAACCATGTGAGTCAACAACTGTCCTCAATTTTGATCGATAGCTACGATC
GACTTGCAATGGCTGAGATGCAGGCATATCAATACCGTCTATTCTTTCTGCTGTTTGACGGGGTCTTAGACGAATACTCCATCCGC
TTTATTGTAGGTTGCAAAACCTGTTCTTCTCCTTCATCACGTTCATGGGCCCAACTTCCTGATCGTTGGAGATCTATGTGAGAATT
CCCCGATGCTGCTATTTCCCCATCTTCTGTATCATCCACCATTCTTTTTGAGACAGAACCTGGCCCCCGGCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880213 ATBRM/CHR2 [Arabidopsis lyrata subsp. lyrata] | 1863 | 8e-206 |
| NP_973695 ATP-dependent helicase BRM [Arabidopsis thaliana] | 1824 | 3e-201 |
| NP_182126 ATP-dependent helicase BRM [Arabidopsis thaliana] | 1824 | 3e-201 |
| AAC62900 putative SNF2 subfamily transcriptional activator [Arabidopsis thaliana] | 1824 | 3e-201 |
| XP_002882046 ubiquitin-conjugating enzyme 6 [Arabidopsis lyrata subsp. lyrata] | 863 | 7e-090 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q6EVK6 ATP-dependent helicase BRM | 1824 | 1e-202 |
| P42750 Ubiquitin-conjugating enzyme E2 6 | 813 | 2e-085 |
| P42748 Ubiquitin-conjugating enzyme E2 4 | 743 | 2e-077 |
| P42749 Ubiquitin-conjugating enzyme E2 5 | 725 | 3e-075 |
| P16577 Ubiquitin-conjugating enzyme E2-23 kDa | 720 | 1e-074 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A5B1R0 Ubiquitin carrier protein | 738 | 1e-075 |
| B9RDU4 Ubiquitin carrier protein | 737 | 2e-075 |
| A5AU32 Ubiquitin carrier protein | 729 | 2e-074 |
| B4FFL4 Ubiquitin carrier protein | 729 | 2e-074 |
| B8BH65 Ubiquitin carrier protein | 729 | 2e-074 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G46020.2 transcription regulatory protein SNF2, putative | 1825 | 7e-204 |
| AT2G46020.1 transcription regulatory protein SNF2, putative | 1825 | 7e-204 |
| AT2G46030.1 UBC6 (ubiquitin-conjugating enzyme 6); ubiquitin-protein ligase | 819 | 3e-087 |
| AT5G41340.1 UBC4 (UBIQUITIN CONJUGATING ENZYME 4); ubiquitin-protein ligase | 750 | 3e-079 |
| AT1G63800.1 UBC5 (ubiquitin-conjugating enzyme 5); ubiquitin-protein ligase | 725 | 2e-076 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
