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Information for unigene UN20178
| FASTA Sequence |
| Unigene ID: UN20178 | Length: 948 |
| SNP | GGAGTGATGGTCGCTAAACATTCGATTTGTGTAATTTTATTTATCGTAATATTACATCCTTCCTCACTCTTCCGTATGGAGGAGGA
GGAGACGATGATGGCAACGAAGGTGATGGAGAGAGGATTCAAGCTGATTCTAGGATCTCAATCGATGGCGAGAAAAAGGATTTTGG
GTGAAATGGGCTATGATTTCACTATCGTGACTGCAGACATCGACGAGAAAGCTATCAGGAGAGACAGTCCTCAAGACTTGGTTGTC
GCTCTCGCTCAAGCCAAGGCAGATGAGATAATATCGAAGCTTGGAGATCAAAGCCAGTTTGCTCAAGATCCTCTACCAACCTTGTT
GATTACTGCTGACACTGTAGTTGTGTACGAAGGTATTATCCGAGAAAAACCAACCTCCAAAGAAGAAGCTCGCCAATTTATCAAAG
GCTATTCCGGGTCACACGGAGGCGTTATTGGATCTGTTATAGTAAGCAACTTGAAAACTGGTGTTCGAAGAGTTGGATGGGACAAA
GCTGAGGTTTATTTCCATGACATACCAGCAAAAGTCATAGACGCTCTTATTGATGATGCCATAACTTTCAAGGTTGCTGGAGGTTT
AACCTTGGAGCATCCCCTCATTTCACCCTTTATCGATACCGTGGTGGGAGGAGTTGATACAGTCATGGGACTTCCTAAAGAACTCA
CTGAAAAATTCATCACCGATGTGTTGTAGCTCTAGCAAGGCTTTTGAAGATTCCTCCTCTAGAAAGGCTTAGATTGATTATGCTCT
GTGGTTCTTAAGATTTTTGTTTGTTTGATTGTGTAATCAAATCGTATATGTTGTAAGTGGATACAACATAGATTTACCTTATCGCT
ATCCCCAAGTTGATGATGTTTCCGGACTCCAAATTCCTCATTTACCCGAAATGAATCCTTTATAACGTGTCAATTTGACTGTTTAG
GC
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_201456 Maf-like protein [Arabidopsis thaliana] | 906 | 2e-095 |
| XP_002865059 maf family protein [Arabidopsis lyrata subsp. lyrata] | 898 | 2e-094 |
| XP_002880683 maf family protein [Arabidopsis lyrata subsp. lyrata] | 885 | 5e-093 |
| CBI17516 unnamed protein product [Vitis vinifera] | 691 | 2e-070 |
| XP_002527711 maf protein, putative [Ricinus communis] | 675 | 1e-068 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54TC5 Maf-like protein DDB_G0281937 | 322 | 5e-029 |
| Q47VG7 Maf-like protein CPS_4557 | 157 | 6e-010 |
| B2RIL9 Maf-like protein PGN_0695 | 157 | 6e-010 |
| Q7MWG0 Maf-like protein PG_0657 | 149 | 5e-009 |
| Q2SBH1 Maf-like protein HCH_05331 | 144 | 2e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SNZ2 Maf protein, putative | 675 | 8e-069 |
| B9HF02 Predicted protein (Fragment) | 656 | 1e-066 |
| C5Y499 Putative uncharacterized protein Sb05g021370 | 629 | 2e-063 |
| B6U7X1 Maf-like protein CV_0124 | 626 | 4e-063 |
| Q2R2T0 Maf-like protein, expressed | 625 | 5e-063 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G66550.1 Maf family protein | 906 | 8e-098 |
| AT5G42770.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Maf-like protein (InterPro:IPR003697); BEST Arabidopsis thaliana protein match is: Maf family protein (TAIR:AT5G66550.1); Has 4061 Blast hits to 4057 proteins in 1128 species: Archae - 23; Bacteria - 2744; Metazoa - 45; Fungi - 50; Plants - 61; Viruses - 0; Other Eukaryotes - 1138 (source: NCBI BLink). | 572 | 4e-059 |
| AT2G25500.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Maf-like protein (InterPro:IPR003697); BEST Arabidopsis thaliana protein match is: Maf family protein (TAIR:AT5G66550.1); Has 693 Blast hits to 693 proteins in 244 species: Archae - 0; Bacteria - 474; Metazoa - 0; Fungi - 5; Plants - 50; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink). | 379 | 1e-036 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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