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Information for unigene UN20179

FASTA Sequence
Unigene ID: UN20179Length: 1017  SNP
TTGCCAGAAATGTAATTATCTTATTTGACTGAATCAAACTTCGAAAATATATTTCATAATTCATGCAAAAGCAACTCAAATACAAC
CAGATAGTACATAAACAGAGGAACTAAAGGCAGTTCAATAAACCGGTGTTCGGCTTATGACTAAATCTGGTTCCAGCTTGACCATG
ACTTAAAACCACTTCACACTTGGTACTGGTGTGGTTTTCAAGGAATGGTACTTGATTCCAGCTTGACCAAGACTTGTAATCACTTC
AAAGTCTCCAGCTTTAGCAGACCCTTCTTGACACGAGACCTGTCTTCTCAGTTCAGCACAAGCACAATACTCTACCTCATACACAT
CTACGTCTTTAAAGGTTGCAAATGTAGTCCTTACTCCTTCCCCGTGAGTGACTAAGAGCAAGTTCTCTGAAGGGTACTTATCAGCA
AGAGTCTTCACCAAACTAAGAAACCGTTCTGTGCATTCTTCCACAGTCTCTTCCCATTGTGGCATCTCTTTATAAACAGGATCAAT
ATTATGATCCACCATTCCCTCAGGAAACATAGCTTCAAGATCTGAAATCTTGAATTCGAATTTTCCATCTTTTGGAGCAATCTCAG
ACCTAATAGCCATACTGTTCATCATCTCACTCAGACCAAACTCGATAGACACCTTGAGCTTAGATTTATCGATGGCAAGCACGTCT
TTAGAGGAAGTAGCGTTTGGGTTTAAGTCAACGGCGGAGAGAGCGGCGATAACTTCTGAAGCGGTCTGAACGCAACGGATGAAGGG
AGAGACGAAGACCCTGTGGATAGGAAACTGGATCTGAGATCGGATCCGTTGACCAGTTTGAAACGCACGAACCAAACCGTCCTGTA
CGAGAGGAGGGTCCCAAGGTCTCGAAGCTGTATCGAGCCAGAGTGGGTTGATCCTATCAACGCGATCACCGTGACGCATCATCAAG
ATGTTTTGGTATCCATCGTTGGTTTTCGAATTAGCAGACGACTCCATTGTTGCTCTGATGGTGGTTGGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_191603 phosphoglycerate mutase-like protein [Arabidopsis thaliana]11983e-129
CAB81830 putative protein [Arabidopsis thaliana]11778e-127
NP_191604 phosphoglycerate mutase-like protein [Arabidopsis thaliana]10093e-107
AAM62796 pRIB5 protein [Arabidopsis thaliana]10093e-107
XP_002876557 hypothetical protein ARALYDRAFT_486518 [Arabidopsis lyrata subsp. lyrata]10093e-107

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9M215 At3g6044011776e-127
Q8LE79 PRIB5 protein10092e-107
Q9M214 At3g6045010092e-107
Q9M216 Putative uncharacterized protein T8B10_908953e-094
B9RD29 Putative uncharacterized protein8041e-083

Arabidopsis top hits (Blast detail)Scoree value
AT3G60440.1 LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), PRIB5 (InterPro:IPR012398); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60450.1); Has 180 Blast hits to 178 proteins in 74 species: Archae - 0; Bacteria - 37; Metazoa - 8; Fungi - 48; Plants - 35; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).11981e-131
AT3G60450.1 INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), PRIB5 (InterPro:IPR012398); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60440.1); Has 187 Blast hits to 185 proteins in 74 species: Archae - 0; Bacteria - 51; Metazoa - 14; Fungi - 36; Plants - 35; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).10091e-109
AT3G60420.1 LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), PRIB5 (InterPro:IPR012398); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60450.1); Has 181 Blast hits to 179 proteins in 72 species: Archae - 0; Bacteria - 53; Metazoa - 4; Fungi - 34; Plants - 34; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).7983e-085
AT3G60420.2 LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60450.1); Has 196 Blast hits to 165 proteins in 65 species: Archae - 0; Bacteria - 41; Metazoa - 2; Fungi - 34; Plants - 58; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).7258e-077

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
64  29%
 
123  21%
 
116  43%
 
71  7%

Unigene MembersMember information