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Information for unigene UN20187
| FASTA Sequence |
| Unigene ID: UN20187 | Length: 1141 |
SSR | | AGGGGACACTTCCTTCTTCTATCTCTCACAATGGCTTCTTCAATAGTAACCTCAAGCTTGAGGCCATTAGCCATGTCAGAATCCTC
CTCTTCAACTACTTTCTCCCACCCTTCATTCTCCACTTTCCACTCCTCCAAAACCCGCTGCTCCCTCCTCACCAAACGCACCAACC
TCCCTCTCTCCTTCTCTCTCAAATCCAAAACCCATCTAAAGAAGTCACCTTTCGTTACCTTAGTCGCCGAGACTTCGGATTGGTCC
GGGGAAGAAGATGGGAGCTCATCATCGGTCGCCGTCGAGGAGAGCGACCCAGAAGAAGCGACGTTTTCTGAAGGGGAAGGAGACGT
GAGCGAAGGAGGAGGAGGAGGAGGAGACTTCCAGGAGCCACCGGAAGAAGCGAAGCTCTTCGTCGGAAACTTGGCTTACGACGTTG
ATAGCCAGGCCTTGGCTATGCTCTTTGAGCAAGCCGGTACTGTTGAAATCGCTGAGGTTATATACAACAGGGAAACCGACCAGAGT
CGTGGGTTTGGGTTTGTGACAATGAGTACGGTTGAAGAAGCTGAGACAGCTGTTGAGAAGTTTAACCGTTATGATTTGAACGGAAG
GCTTTTGACAGTAAACAAGGCAGCTCCCAAAGGATCACGTCCAGAACGCCAACCTCGGGTATACGAACCTGCATTCAGAGTGTATG
TTGGAAACCTACCGTGGGATGTGGACAGTGGTCGTCTAGAACAAGTTTTCAGCGAGCATGGCAAAGTTGTGGAAGCTAAAGTGGTT
TATGACCGTGAGACAGGTCGTTCACGTGGATTTGGTTTTGTTACAATGTCTAATGAGACTGAACTCAATGATGCCGTCGCTGCTCT
TGACGGACAGAACATGGAGGGTAGAGCGATCAGAGTAAATGTAGCGGAGGAGCGTCCAAGGCGTGGATTTTAAGGGACTGAGAAGT
TCCCTCTGTCTCTTCCATTTTGTTTAGACGGGATTCGTACACTTTTTGTGTTTTTTTTTGGTTCAGAACTCTGAATGCGAAGCTTT
CTTCTAAATTCTAATGTAATTTGTATAATCATTTCTCTTTGACAGTCTATCCACATTTGTGTCATGCCTTGTCAGTGTTATAACTG
TGGTAGCAAGGAGCTTTACAACC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867645 RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata] | 1211 | 1e-130 |
| BAA06520 RNA-binding protein cp31 [Arabidopsis thaliana] | 1015 | 6e-108 |
| BAA06521 RNA-binding protein cp31 [Arabidopsis thaliana] | 1014 | 8e-108 |
| NP_194208 ribonucleoprotein [Arabidopsis thaliana] | 908 | 2e-095 |
| AAA18379 RNA-binding protein 2 [Arabidopsis thaliana] | 908 | 2e-095 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q04836 31 kDa ribonucleoprotein, chloroplastic | 908 | 7e-097 |
| P28644 28 kDa ribonucleoprotein, chloroplastic | 827 | 2e-087 |
| P19683 31 kDa ribonucleoprotein, chloroplastic | 806 | 4e-085 |
| P19682 28 kDa ribonucleoprotein, chloroplastic | 768 | 1e-080 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 515 | 2e-051 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94EH5 AT4g24770/F22K18_30 | 904 | 3e-095 |
| Q39209 RNA binding protein (Fragment) | 902 | 5e-095 |
| B9RAR1 Ribonucleoprotein, chloroplast, putative | 861 | 3e-090 |
| B0M184 Chloroplast RNA binding protein | 857 | 9e-090 |
| Q40270 RNA-binding protein | 857 | 9e-090 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 909 | 5e-098 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 824 | 3e-088 |
| AT3G52380.1 CP33; RNA binding | 423 | 1e-041 |
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 390 | 7e-038 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 262 | 5e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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