RadishBase

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Information for unigene UN20199

FASTA Sequence

Unigene ID: UN20199	Length: 1265		SNP
AGAGAGAATGGCGTCTAAGCTCTGCGACTCATGCAAATCGGCGACTGCGGCGCTGTACTGCCGCCCAGACGCGGCGTTTCTCTGCC TCAGCTGCGACTCTAAAGTCCACGCGGCGAACAAGCTCGCGTCGAGGCACGCGCGCGTGTGGATGTGCGAAGTGTGCGAGCAAGCG CCGGCTCACGTCACGTGCAAGGCGGACGCGGCCGCCCTCTGCGTCACGTGCGACCGAGACATCCACTCCGCAAACCCCTTGGCTCG CCGCCACGAGCGCGTCCCCGTCACGCCTTTCTACGACTCAGTCTCCGACTCCGACGGATCCGCCAAGCACGCCGCCGTCAACTTCC TCGACGACTGCTACTTCTCCGATCTTGACGGGAACGCCAGCCGCGAGGAGGAGGATGAGGCCGCCTCGTGGCTGCTCCCGAATCCG AAGACGGCGGCGCTGGCTACGGCGGTGCCGGGAGATGAACCGGAGATGAACACGGGTCAGCAGTACATGTTCACGGATCCGGATCC GTATCTGGACTACGGGACTGTTGATCCGAAGGTGGAGTCGCAGGAGCAGAACAGCTCCGGCACCACCGACGGTGTGGTTCCGGTGG AGAATCGGACGGTTAAGGTGGCGACGGCGGTGAACGAGAACTGCTACGAAATTGATTTCACCGGAGGATCTAAAGGCTTTACTTAC GGTTACAACTCCATTAGCCACAGCCAGGTATCGTCATCCTCATTGGAAGTGGGAGTGGTGCCAGATGGCGGGTCTGTGGCGGACGT TTCATACCCTTACGGAGGTGCTGCAACGAGTGTAACCGATCCGGGAACTCAGAGGGCAGTTCCGCTAACGGCAGCGGAGAGAGAGG CGAGAGTAATGAGGTACAGAGAGAAGAGGAAGAACAGGAAGTTCGAGAAGACGATAAGGTATGCTTCGAGGAAAGCGTATGCGGAG ATGAGACCTAGGATCAAGGGAAGGTTTGCGAAGCGGACTGATACGAATGAGAGCAACGACGTGGTTGTTGGTCATGGCGGTGGTAT CTTTAGCGGGTTTGGACTTGTACCTACATTTTAGAGATTGCTGAATGCTGAGTGAGAGAGAGACTCTTAATATGTGGGTACTTTGT TTGGTGTTTTAGTAATAATGTTTTTATTAACAAACTTTTGTCTTTTAAGAGTTGTTTTGTTTTATTTATGTTGATGTAATGTTTTA TATTTTCGTGTATATATGATTATGTGATTTTGAACAAGTTTTTGTGTATGCAATGTTTTAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ADW65758 CONSTANS-like protein [Gossypium hirsutum]	1114	2e-119
ABK96477 unknown [Populus trichocarpa x Populus deltoides]	1082	1e-115
XP_002309695 predicted protein [Populus trichocarpa]	1063	2e-113
ACD69427 CONSTANS-like 1 [Malus x domestica]	1056	1e-112
XP_002324936 predicted protein [Populus trichocarpa]	1055	2e-112

Swiss-Prot top hits (Blast detail)	Score	e value
Q940T9 Zinc finger protein CONSTANS-LIKE 4	875	5e-093
Q9FHH8 Zinc finger protein CONSTANS-LIKE 5	759	1e-079
O50055 Zinc finger protein CONSTANS-LIKE 1	647	1e-066
Q39057 Zinc finger protein CONSTANS	604	1e-061
Q9SK53 Zinc finger protein CONSTANS-LIKE 3	477	7e-047

TrEMBL top hits (Blast detail)	Score	e value
A9PJC4 Putative uncharacterized protein	1082	8e-116
B9HB92 Predicted protein	1063	1e-113
B3GCI6 CONSTANS-like 1	1056	8e-113
B9ILB0 Predicted protein	1055	1e-112
B5THI2 CONSTANS-like protein	1045	2e-111

Arabidopsis top hits (Blast detail)	Score	e value
AT5G24930.1 zinc finger (B-box type) family protein	880	1e-094
AT5G57660.1 zinc finger (B-box type) family protein	760	1e-080
AT5G15850.1 COL1 (constans-like 1); transcription factor/ zinc ion binding	648	9e-068
AT5G15840.1 CO (CONSTANS); transcription factor/ transcription regulator/ zinc ion binding	605	9e-063
AT2G24790.2 COL3 (CONSTANS-LIKE 3); protein binding / transcription factor/ zinc ion binding	477	6e-048

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


21	2			22%


19	4			44%


10	3			33%

Unigene Members	Member information